Os03g0761100
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Protein phosphatase 2C-like domain containing protein.
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Os03g0761100 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Protein phosphatase 2C-like domain containing protein.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = temperature,
response mode = > th, dose dependency = dose independent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 44.9 | 0.315 | 11.3 | 0.0641 | 0.421 | 0.0682 | -0.396 | -0.777 | -0.0856 | 4.21 | 20.6 | 22 | -- | -- |
| 46.76 | 0.321 | 11.3 | 0.167 | 0.443 | 0.228 | -0.0757 | -- | -0.0646 | 4.07 | 19.21 | 15 | -- | -- |
| 45.29 | 0.316 | 11.3 | 0.0848 | 0.422 | 0.0788 | -- | -0.671 | -0.0801 | 4.25 | 20.5 | 14 | -- | -- |
| 46.57 | 0.318 | 11.3 | 0.154 | 0.441 | 0.245 | -- | -- | -0.0616 | 4.21 | 18.9 | 2 | -- | -- |
| 49.61 | 0.328 | 11.3 | 0.223 | -- | -0.284 | -- | -0.552 | 1.32e-05 | -- | 26.5 | 246 | -- | -- |
| 48.29 | 0.326 | 11.3 | 0.235 | 0.415 | -- | -0.0457 | -- | -0.032 | 4.38 | -- | -- | -- | -- |
| 48.29 | 0.325 | 11.3 | 0.236 | 0.414 | -- | -- | -- | -0.0317 | 4.37 | -- | -- | -- | -- |
| 49.64 | 0.328 | 11.2 | 0.339 | -- | -0.316 | -- | -- | 0.0824 | -- | 25.7 | 250 | -- | -- |
| 47.19 | 0.32 | 11.3 | -- | 0.456 | 0.295 | -- | -- | -0.085 | 4.02 | 18.98 | 2 | -- | -- |
| 57.51 | 0.354 | 11.3 | 0.252 | -- | -- | -- | -- | -0.0208 | -- | -- | -- | -- | -- |
| 49.75 | 0.33 | 11.3 | -- | 0.419 | -- | -- | -- | -0.058 | 4.36 | -- | -- | -- | -- |
| 52.53 | 0.338 | 11.2 | -- | -- | -0.289 | -- | -- | 0.0401 | -- | 25.78 | 250 | -- | -- |
| 59.19 | 0.359 | 11.3 | -- | -- | -- | -- | -- | -0.0487 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 42.92 | temperature | 20 | 30 | > th | dose independent | rect. | 20 | 22 |
| 3 | 43.05 | radiation | 10 | 720 | < th | dose independent | rect. | 14 | 1 |
| 4 | 43.19 | radiation | 10 | 720 | < th | dose independent | rect. | 14 | 3 |
| 9 | 43.50 | radiation | 10 | 720 | < th | dose dependent | rect. | 14 | 3 |
| 11 | 43.54 | radiation | 10 | 720 | < th | dose dependent | rect. | 10 | 16 |
| 12 | 43.55 | radiation | 10 | 720 | < th | dose dependent | rect. | 14 | 1 |
| 15 | 43.62 | radiation | 20 | 1440 | < th | dose independent | rect. | 11 | 2 |
| 16 | 43.62 | radiation | 10 | 720 | < th | dose dependent | rect. | 12 | 14 |
| 18 | 43.64 | humidity | 90 | 14400 | < th | dose independent | rect. | 6 | 1 |
| 22 | 43.66 | radiation | 10 | 720 | < th | dose independent | rect. | 12 | 14 |
| 23 | 43.66 | radiation | 10 | 720 | < th | dose dependent | sin | 18 | NA |
| 24 | 43.66 | radiation | 20 | 1440 | < th | dose dependent | rect. | 11 | 2 |
| 27 | 43.68 | radiation | 10 | 720 | < th | dose independent | rect. | 13 | 10 |
| 30 | 43.70 | radiation | 10 | 720 | < th | dose dependent | rect. | 10 | 7 |
| 32 | 43.73 | radiation | 10 | 720 | < th | dose dependent | rect. | 13 | 10 |
| 34 | 43.74 | radiation | 20 | 720 | < th | dose dependent | rect. | 11 | 12 |
| 50 | 43.81 | radiation | 10 | 720 | < th | dose independent | sin | 16 | NA |
| 65 | 43.87 | humidity | 90 | 14400 | > th | dose independent | rect. | 6 | 1 |
| 96 | 43.96 | radiation | 10 | 720 | < th | dose independent | rect. | 12 | 18 |
| 97 | 43.96 | radiation | 20 | 720 | < th | dose independent | rect. | 11 | 20 |
| 176 | 44.20 | wind | 5 | 90 | > th | dose independent | rect. | 12 | 18 |
| 186 | 44.21 | wind | 5 | 90 | > th | dose dependent | rect. | 12 | 18 |
| 205 | 44.24 | temperature | 20 | 30 | > th | dose independent | rect. | 23 | 19 |
| 233 | 44.31 | humidity | 90 | 14400 | > th | dose dependent | rect. | 5 | 2 |
| 269 | 44.38 | wind | 5 | 90 | > th | dose dependent | sin | 16 | NA |
| 293 | 44.43 | atmosphere | 1005 | 10 | > th | dose independent | rect. | 18 | 9 |
| 311 | 44.45 | radiation | 1 | 1440 | > th | dose independent | rect. | 9 | 4 |
| 319 | 44.46 | temperature | 25 | 10 | < th | dose dependent | sin | 21 | NA |
| 333 | 44.48 | temperature | 20 | 30 | > th | dose independent | rect. | 1 | 17 |
| 342 | 44.48 | temperature | 10 | 30 | > th | dose dependent | rect. | 20 | 22 |
| 359 | 44.51 | wind | 5 | 90 | > th | dose dependent | rect. | 15 | 15 |
| 412 | 44.58 | radiation | 10 | 4320 | < th | dose dependent | rect. | 19 | 10 |
| 468 | 44.66 | wind | 5 | 90 | > th | dose independent | rect. | 12 | 6 |
| 480 | 44.67 | temperature | 20 | 1440 | > th | dose independent | rect. | 6 | 1 |
| 481 | 44.67 | wind | 1 | 270 | < th | dose independent | rect. | 23 | 2 |
| 497 | 44.68 | temperature | 25 | 10 | < th | dose dependent | rect. | 8 | 14 |
| 501 | 44.69 | temperature | 25 | 10 | < th | dose dependent | rect. | 10 | 12 |
| 505 | 44.70 | wind | 5 | 90 | > th | dose independent | sin | 17 | NA |
| 506 | 44.70 | radiation | 1 | 1440 | < th | dose independent | rect. | 9 | 3 |
| 513 | 44.70 | temperature | 25 | 90 | < th | dose dependent | rect. | 11 | 10 |
| 526 | 44.72 | wind | 5 | 90 | > th | dose independent | rect. | 12 | 11 |
| 574 | 44.77 | radiation | 10 | 720 | > th | dose independent | rect. | 13 | 4 |
| 599 | 44.79 | temperature | 20 | 1440 | < th | dose independent | rect. | 6 | 1 |
| 602 | 44.79 | wind | 5 | 90 | > th | dose independent | rect. | 15 | 15 |
| 604 | 44.79 | temperature | 20 | 10 | > th | dose independent | rect. | 10 | 21 |
| 611 | 44.80 | radiation | 20 | 4320 | > th | dose independent | rect. | 6 | 2 |
| 655 | 44.82 | temperature | 20 | 10 | > th | dose independent | rect. | 8 | 23 |
| 656 | 44.82 | radiation | 20 | 4320 | > th | dose dependent | rect. | 7 | 1 |
| 676 | 44.82 | radiation | 40 | 720 | < th | dose dependent | rect. | 14 | 17 |
| 686 | 44.83 | radiation | 10 | 720 | > th | dose independent | rect. | 13 | 17 |
| 718 | 44.84 | humidity | 90 | 270 | > th | dose dependent | rect. | 20 | 6 |
| 739 | 44.86 | radiation | 10 | 720 | > th | dose independent | sin | 17 | NA |
| 745 | 44.86 | wind | 7 | 4320 | > th | dose dependent | rect. | 15 | 1 |
| 756 | 44.87 | atmosphere | 1005 | 270 | < th | dose independent | rect. | 23 | 2 |
| 757 | 44.87 | atmosphere | 1005 | 270 | < th | dose independent | rect. | 21 | 5 |
| 772 | 44.88 | humidity | 80 | 720 | < th | dose independent | rect. | 13 | 6 |
| 809 | 44.90 | wind | 1 | 270 | < th | dose dependent | rect. | 24 | 1 |
| 813 | 44.90 | humidity | 90 | 270 | > th | dose dependent | rect. | 18 | 8 |
| 832 | 44.92 | wind | 7 | 4320 | > th | dose independent | rect. | 17 | 1 |
| 852 | 44.93 | radiation | 1 | 4320 | < th | dose dependent | rect. | 7 | 1 |
| 861 | 44.94 | wind | 7 | 4320 | > th | dose independent | rect. | 15 | 3 |
| 878 | 44.95 | wind | 3 | 30 | > th | dose dependent | rect. | 12 | 6 |
| 885 | 44.95 | temperature | 25 | 10 | < th | dose dependent | rect. | 6 | 16 |
| 887 | 44.96 | radiation | 1 | 4320 | > th | dose independent | rect. | 7 | 2 |
| 888 | 44.96 | radiation | 1 | 4320 | < th | dose independent | rect. | 7 | 2 |
| 894 | 44.96 | humidity | 90 | 720 | < th | dose dependent | rect. | 13 | 6 |
| 921 | 44.98 | humidity | 80 | 720 | > th | dose independent | rect. | 12 | 5 |
| 942 | 44.99 | wind | 7 | 4320 | < th | dose independent | rect. | 15 | 3 |
| 956 | 45.00 | wind | 7 | 4320 | > th | dose independent | rect. | 13 | 5 |
| 982 | 45.01 | wind | 7 | 4320 | > th | dose independent | rect. | 13 | 8 |
| 992 | 45.01 | humidity | 90 | 270 | > th | dose dependent | rect. | 12 | 14 |
| 997 | 45.02 | radiation | 30 | 4320 | < th | dose independent | rect. | 2 | 6 |
| 998 | 45.02 | humidity | 90 | 30 | < th | dose independent | rect. | 18 | 7 |