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Notice!
This gene did NOT pass the analysis criteria (log2(expression) > 5 in more than 80% of samples & normality of residuals was not rejected).
The modeling results may be unreliable.

Os03g0761000

blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II

Description : SWIB/MDM2 domain containing protein.


log2(Expression) ~ Norm(μ, σ2)

μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8

par. value (S.E.)
α : 7.29 (0.0529) R2 : 0.854
β1 : 4.37 (0.197) R2dD : 0.17 R2D : 0.152
β2 : 5.01 (0.152) R2dC : 0.431 R2C : 0.592
β3 : -2.1 (0.141) R2dE : 0.0889 R2E : 0.272
β4 : -- (--) R2dD*C : -- R2D*C : --
β5 : -2.27 (0.509) R2dD*E : 0.00663 R2D*E : -0.00174
γ1 : 0.264 (0.113) R2dN8 : 0.0024 R2N8 : -0.00632
σ : 0.986
deviance : 448.61
__
_____
C
peak time of C : 16.9
E
wheather : temperature
threshold : 29.35
memory length : 89
response mode : < th
dose dependency : dose independent
G
type of G : sin
peak or start time of G : 21.1
open length of G : --

__

Dependence on each variable

Residual plot

Process of the parameter reduction
(fixed parameters. wheather = temperature, response mode = < th, dose dependency = dose independent, type of G = sin)

deviance σ α β1 β2 β3 β4 β5 γ1 peak time of C threshold memory length peak or start time of G open length of G
447.3 0.994 7.3 4.35 5.02 -2.09 0.744 -2.13 0.259 16.9 29.3 89 21.1 --
463.81 1 7.31 4.19 5.04 -2.12 1.23 -- 0.212 16.9 29.3 89 21 --
448.61 0.986 7.29 4.37 5.01 -2.1 -- -2.27 0.264 16.9 29.35 89 21.1 --
466.97 1.01 7.33 4.19 5.08 -2.16 -- -- 0.214 16.8 29.36 106 21 --
530.13 1.07 7.21 4.36 -- -6.28 -- -2.15 0.333 -- 77.82 4 0.154 --
530.12 1.08 7.34 4.4 6.28 -- 2.16 -- 0.332 17.9 -- -- -- --
541.54 1.09 7.34 4.39 6.29 -- -- -- 0.341 17.9 -- -- -- --
541.54 1.08 7.2 4.39 -- -6.29 -- -- 0.341 -- 110.1 4 0.173 --
899.79 1.4 7.45 -- 6.25 -2.01 -- -- -0.177 17.2 26.9 281 18.8 --
2593.12 2.38 7.24 4.2 -- -- -- -- 0.195 -- -- -- -- --
1048.9 1.51 7.45 -- 6.22 -- -- -- -0.148 17.9 -- -- -- --
996.09 1.47 7.3 -- -- -6.17 -- -- -0.0634 -- 31.33 2 24 --
3057.63 2.58 7.34 -- -- -- -- -- -0.271 -- -- -- -- --

Results of the grid search

Summarized heatmap of deviance
 Histogram

Local optima within top1000 grid-points

rank deviance wheather threshold memory length response mode dose dependency type of G peak or start time of G open length of G
1 445.86 temperature 10 270 > th dose dependent rect. 8 9
10 455.39 temperature 25 90 > th dose dependent sin 1 NA
12 455.98 temperature 30 270 < th dose dependent rect. 4 15
13 456.06 temperature 30 90 < th dose dependent rect. 6 16
14 456.24 temperature 25 270 > th dose dependent sin 4 NA
16 456.70 temperature 25 10 > th dose dependent rect. 9 12
19 457.06 wind 9 270 < th dose dependent rect. 9 9
23 457.50 radiation 30 270 < th dose dependent rect. 17 16
33 458.29 temperature 25 270 < th dose independent rect. 4 15
36 458.31 wind 7 270 < th dose independent rect. 8 10
39 458.39 temperature 30 90 < th dose independent rect. 4 19
41 458.48 humidity 60 270 > th dose dependent rect. 3 10
68 460.55 temperature 30 30 < th dose independent rect. 6 17
71 460.71 temperature 25 10 > th dose dependent rect. 9 16
77 460.80 humidity 70 90 > th dose independent rect. 4 19
83 460.98 humidity 70 90 > th dose independent rect. 6 17
84 461.00 temperature 30 90 < th dose dependent sin 23 NA
87 461.12 humidity 90 270 < th dose independent rect. 8 9
94 461.32 temperature 25 30 > th dose dependent rect. 9 9
99 461.43 temperature 25 10 > th dose dependent rect. 9 20
104 461.51 humidity 60 270 > th dose dependent rect. 3 18
105 461.56 wind 7 270 < th dose independent rect. 21 21
118 461.81 humidity 80 270 > th dose independent rect. 4 7
133 462.09 radiation 40 270 < th dose independent rect. 3 19
147 462.34 humidity 60 270 > th dose dependent rect. 4 16
158 462.51 wind 7 270 < th dose independent rect. 22 19
173 462.77 humidity 60 90 > th dose dependent rect. 6 16
187 463.19 radiation 40 270 < th dose dependent rect. 3 9
213 463.65 temperature 25 270 > th dose dependent rect. 24 15
219 463.73 temperature 25 270 > th dose independent rect. 8 9
222 463.79 radiation 40 270 < th dose independent rect. 1 22
226 463.83 radiation 20 270 < th dose independent rect. 17 16
227 463.84 radiation 40 90 < th dose independent rect. 6 17
279 464.77 temperature 10 90 > th dose dependent sin 0 NA
280 464.79 temperature 30 90 < th dose independent sin 3 NA
310 465.32 humidity 60 10 > th dose independent rect. 6 17
315 465.49 radiation 40 270 < th dose dependent rect. 3 19
319 465.51 temperature 30 90 < th dose dependent rect. 6 11
353 466.02 radiation 40 270 < th dose independent rect. 3 10
364 466.26 humidity 60 270 > th dose dependent sin 2 NA
365 466.28 radiation 40 270 < th dose independent rect. 3 12
462 467.36 radiation 30 270 < th dose independent rect. 3 8
489 467.53 wind 9 270 < th dose dependent rect. 22 17
502 467.64 temperature 25 30 > th dose dependent rect. 4 17
512 467.71 radiation 20 270 < th dose independent rect. 15 19
514 467.73 wind 9 270 < th dose dependent rect. 22 19
517 467.76 humidity 70 90 > th dose independent rect. 19 16
590 468.27 temperature 25 30 > th dose dependent rect. 24 21
647 468.78 temperature 15 1440 > th dose independent rect. 7 17
685 469.01 atmosphere 1010 270 < th dose independent rect. 15 8
715 469.23 radiation 20 270 < th dose independent rect. 3 19
840 470.19 temperature 25 90 > th dose dependent rect. 18 23
919 470.80 atmosphere 1010 270 < th dose independent rect. 17 5