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Notice!
This gene did NOT pass the analysis criteria (log2(expression) > 5 in more than 80% of samples & normality of residuals was not rejected).
The modeling results may be unreliable.

Os03g0760000

blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II

Description : Cytochrome P450 family protein.


log2(Expression) ~ Norm(μ, σ2)

μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8

par. value (S.E.)
α : 3.05 (0.0411) R2 : 0.267
β1 : -- (--) R2dD : -- R2D : --
β2 : -- (--) R2dC : -- R2C : --
β3 : 3.24 (0.251) R2dE : 0.269 R2E : 0.266
β4 : -- (--) R2dD*C : -- R2D*C : --
β5 : -- (--) R2dD*E : -- R2D*E : --
γ1 : 0.0584 (0.0868) R2dN8 : 0.000746 R2N8 : -0.00203
σ : 0.771
deviance : 274.17
__
_____
C
peak time of C : --
E
wheather : radiation
threshold : 10
memory length : 22
response mode : < th
dose dependency : dose dependent
G
type of G : rect.
peak or start time of G : 11
open length of G : 6.88

__

Dependence on each variable

Residual plot

Process of the parameter reduction
(fixed parameters. wheather = radiation, response mode = < th, dose dependency = dose dependent, type of G = rect.)

deviance σ α β1 β2 β3 β4 β5 γ1 peak time of C threshold memory length peak or start time of G open length of G
241.38 0.73 3.04 0.688 0.0815 1.73 0.898 3.47 0.0922 17.9 19.09 10 11 7.07
254.25 0.743 2.96 0.827 0.26 2.18 1.77 -- 0.287 17.4 12.8 28 10.8 7.07
242.09 0.73 3.05 0.685 0.111 1.7 -- 3.9 0.0869 20.4 19.09 10 11 7.07
262.81 0.755 2.97 0.73 0.12 2.89 -- -- 0.251 17.3 10 28 10.9 6.94
242.73 0.73 3.05 0.687 -- 1.74 -- 3.93 0.0878 -- 19.09 10 11 7.07
322.77 0.842 3.06 0.689 0.68 -- 2.43 -- 0.0374 17.6 -- -- -- --
337.32 0.86 3.06 0.679 0.695 -- -- -- 0.0478 17.6 -- -- -- --
262.8 0.755 2.99 0.721 -- 3.29 -- -- 0.214 -- 9.982 24 11 6.89
274.68 0.772 3.03 -- 0.134 3.19 -- -- 0.129 17.1 10.02 28 10.9 6.94
362.4 0.89 3.05 0.656 -- -- -- -- 0.031 -- -- -- -- --
349.46 0.874 3.07 -- 0.684 -- -- -- -0.0278 17.6 -- -- -- --
274.17 0.771 3.05 -- -- 3.24 -- -- 0.0584 -- 10 22 11 6.88
373.76 0.902 3.06 -- -- -- -- -- -0.0418 -- -- -- -- --

Results of the grid search

Summarized heatmap of deviance
 Histogram

Local optima within top1000 grid-points

rank deviance wheather threshold memory length response mode dose dependency type of G peak or start time of G open length of G
1 241.72 radiation 20.0 10 < th dose dependent rect. 11 7
3 242.72 radiation 40.0 90 < th dose dependent rect. 13 5
8 244.90 radiation 10.0 30 < th dose independent rect. 11 7
13 245.53 radiation 40.0 270 < th dose independent rect. 13 3
15 246.54 radiation 10.0 90 < th dose independent rect. 1 17
18 247.77 radiation 10.0 10 < th dose dependent rect. 8 10
39 250.51 radiation 10.0 10 < th dose dependent rect. 6 12
56 251.92 radiation 20.0 90 < th dose dependent rect. 1 17
58 252.03 radiation 40.0 270 < th dose independent rect. 14 1
63 252.44 radiation 20.0 10 < th dose dependent rect. 1 17
78 253.52 radiation 10.0 90 < th dose independent rect. 13 5
106 254.52 atmosphere 995.0 270 > th dose dependent rect. 13 4
118 255.18 atmosphere 1000.0 90 > th dose dependent rect. 15 3
130 255.56 atmosphere 995.0 270 > th dose dependent rect. 12 6
190 257.85 radiation 20.0 10 < th dose dependent rect. 4 14
221 259.12 radiation 10.0 10 < th dose independent rect. 6 13
234 259.65 radiation 20.0 10 < th dose dependent sin 0 NA
235 259.67 humidity 50.0 10 > th dose dependent rect. 15 3
255 260.28 radiation 10.0 10 < th dose independent rect. 4 14
310 262.13 radiation 10.0 90 > th dose independent rect. 7 8
316 262.28 radiation 10.0 10 < th dose independent sin 0 NA
325 262.55 humidity 70.0 10 > th dose independent rect. 14 4
334 262.69 atmosphere 1000.0 270 > th dose independent rect. 13 3
339 262.85 atmosphere 1005.0 90 > th dose independent rect. 15 3
340 262.87 radiation 10.0 10 > th dose independent sin 0 NA
358 263.18 wind 7.0 270 < th dose independent rect. 17 20
366 263.40 humidity 50.0 90 > th dose independent rect. 15 3
376 263.61 wind 9.0 10 < th dose dependent rect. 15 4
383 263.79 precipitation 0.1 90 < th dose independent rect. 15 3
384 263.79 precipitation 0.1 90 < th dose dependent rect. 15 3
396 263.96 temperature 20.0 270 > th dose independent rect. 13 4
402 264.04 wind 9.0 270 < th dose independent rect. 13 4
404 264.10 temperature 10.0 270 > th dose independent rect. 13 4
406 264.10 atmosphere 1010.0 270 < th dose independent rect. 13 4
408 264.10 temperature 10.0 270 > th dose independent rect. 17 20
409 264.10 precipitation 0.1 90 < th dose independent rect. 18 21
410 264.10 precipitation 0.1 90 < th dose dependent rect. 18 21
415 264.22 wind 9.0 90 < th dose independent rect. 15 3
421 264.38 radiation 10.0 90 > th dose independent rect. 17 22
422 264.38 wind 9.0 90 < th dose dependent rect. 15 3
438 264.43 temperature 20.0 90 > th dose independent rect. 15 3
439 264.43 wind 7.0 270 < th dose independent rect. 16 22
446 264.52 temperature 10.0 90 > th dose independent rect. 15 3
448 264.52 atmosphere 1010.0 90 < th dose independent rect. 15 3
470 264.86 wind 1.0 270 > th dose independent rect. 14 2
478 264.98 wind 1.0 270 > th dose independent rect. 13 4
483 265.00 temperature 10.0 270 > th dose independent rect. 16 22
517 265.54 humidity 50.0 10 > th dose independent rect. 15 4
521 265.56 radiation 30.0 90 < th dose independent rect. 13 18
537 265.78 radiation 10.0 10 < th dose independent rect. 22 21
539 265.79 radiation 1.0 270 > th dose independent rect. 14 2
554 266.03 temperature 10.0 1440 > th dose independent rect. 16 3
559 266.03 temperature 10.0 1440 > th dose independent rect. 19 21
562 266.04 atmosphere 1015.0 1440 < th dose independent rect. 16 3
567 266.09 radiation 20.0 10 < th dose dependent rect. 10 22
580 266.36 atmosphere 995.0 270 > th dose independent rect. 17 20
585 266.46 wind 9.0 270 < th dose independent rect. 18 18
618 266.72 temperature 20.0 270 > th dose independent rect. 12 6
620 266.73 temperature 10.0 270 > th dose independent rect. 12 6
622 266.73 atmosphere 1015.0 270 < th dose independent rect. 12 6
623 266.73 temperature 10.0 270 > th dose independent rect. 18 18
639 266.82 wind 9.0 270 < th dose independent rect. 12 6
672 267.07 wind 1.0 270 > th dose independent rect. 12 6
679 267.19 radiation 1.0 270 > th dose independent rect. 13 4
690 267.35 atmosphere 995.0 270 > th dose independent rect. 18 18
699 267.43 radiation 10.0 90 < th dose independent rect. 21 22
711 267.56 radiation 40.0 270 < th dose independent rect. 13 16
724 267.71 temperature 30.0 10 < th dose dependent rect. 13 5
725 267.73 precipitation 0.1 270 < th dose independent rect. 12 6
726 267.73 precipitation 0.1 270 < th dose dependent rect. 12 6
747 267.94 radiation 40.0 10 < th dose dependent rect. 12 20
760 268.06 radiation 10.0 10 < th dose independent rect. 11 21
761 268.07 radiation 10.0 10 > th dose independent rect. 16 23
811 268.29 radiation 40.0 1440 < th dose independent rect. 16 3
835 268.52 wind 1.0 10 > th dose independent rect. 15 4
889 268.90 temperature 30.0 90 < th dose dependent rect. 13 5
938 269.39 precipitation 0.1 90 < th dose independent rect. 1 17
939 269.39 precipitation 0.1 90 < th dose dependent rect. 1 17
942 269.44 precipitation 0.1 90 < th dose independent rect. 18 7
943 269.44 precipitation 0.1 90 < th dose dependent rect. 18 7
945 269.47 radiation 20.0 10 < th dose dependent rect. 22 21
957 269.58 humidity 50.0 270 > th dose independent rect. 18 17
972 269.72 temperature 30.0 10 < th dose independent rect. 15 3
976 269.73 wind 7.0 270 < th dose independent rect. 7 15