Os03g0758000
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Similar to WRKY DNA binding protein.
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Os03g0758000 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Similar to WRKY DNA binding protein.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = temperature,
response mode = > th, dose dependency = dose dependent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 139.76 | 0.555 | 9.16 | 3.42 | 0.721 | -1.33 | 0.518 | 0.0196 | 0.529 | 19.3 | 26.38 | 1374 | -- | -- |
| 139.76 | 0.551 | 9.16 | 3.41 | 0.721 | -1.32 | 0.517 | -- | 0.522 | 19.3 | 26.46 | 1374 | -- | -- |
| 140.41 | 0.552 | 9.16 | 3.4 | 0.725 | -1.32 | -- | 0.0175 | 0.52 | 19.1 | 26.51 | 1386 | -- | -- |
| 140.41 | 0.552 | 9.16 | 3.4 | 0.726 | -1.31 | -- | -- | 0.52 | 19.1 | 26.51 | 1391 | -- | -- |
| 168.12 | 0.604 | 9.16 | 3.28 | -- | -1.3 | -- | -0.439 | 0.498 | -- | 26.23 | 1375 | -- | -- |
| 219.17 | 0.694 | 9.17 | 2.96 | 0.779 | -- | 0.503 | -- | 0.473 | 18.5 | -- | -- | -- | -- |
| 219.78 | 0.694 | 9.17 | 2.95 | 0.782 | -- | -- | -- | 0.475 | 18.4 | -- | -- | -- | -- |
| 168.11 | 0.604 | 9.14 | 3.4 | -- | -1.34 | -- | -- | 0.529 | -- | 26.3 | 1378 | -- | -- |
| 425 | 0.96 | 9.2 | -- | 0.696 | -0.786 | -- | -- | 0.106 | 18.8 | 28.69 | 2657 | -- | -- |
| 251.53 | 0.741 | 9.15 | 2.93 | -- | -- | -- | -- | 0.458 | -- | -- | -- | -- | -- |
| 449.28 | 0.992 | 9.24 | -- | 0.743 | -- | -- | -- | 0.146 | 18.6 | -- | -- | -- | -- |
| 447.79 | 0.986 | 9.27 | -- | -- | -0.747 | -- | -- | -0.0394 | -- | 30.2 | 1406 | -- | -- |
| 478.05 | 1.02 | 9.23 | -- | -- | -- | -- | -- | 0.133 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 127.86 | temperature | 25.0 | 14400 | > th | dose dependent | rect. | 18 | 5 |
| 3 | 128.04 | humidity | 70.0 | 14400 | < th | dose independent | rect. | 19 | 1 |
| 4 | 128.04 | humidity | 70.0 | 14400 | > th | dose independent | rect. | 19 | 12 |
| 8 | 128.17 | humidity | 70.0 | 14400 | < th | dose independent | rect. | 19 | 12 |
| 12 | 128.36 | humidity | 70.0 | 14400 | > th | dose independent | rect. | 19 | 9 |
| 28 | 128.60 | humidity | 70.0 | 14400 | < th | dose independent | rect. | 18 | 4 |
| 38 | 128.64 | humidity | 70.0 | 14400 | > th | dose independent | rect. | 19 | 4 |
| 85 | 129.13 | temperature | 30.0 | 14400 | < th | dose independent | rect. | 16 | 11 |
| 87 | 129.14 | temperature | 30.0 | 14400 | < th | dose independent | rect. | 16 | 3 |
| 89 | 129.14 | temperature | 30.0 | 14400 | < th | dose independent | rect. | 16 | 9 |
| 105 | 129.22 | temperature | 30.0 | 14400 | > th | dose independent | rect. | 16 | 3 |
| 119 | 129.23 | temperature | 30.0 | 14400 | < th | dose independent | sin | 12 | NA |
| 121 | 129.29 | temperature | 30.0 | 14400 | > th | dose independent | sin | 12 | NA |
| 158 | 129.52 | temperature | 25.0 | 14400 | > th | dose dependent | sin | 12 | NA |
| 171 | 129.74 | precipitation | 0.1 | 43200 | > th | dose dependent | rect. | 3 | 15 |
| 289 | 130.35 | temperature | 30.0 | 14400 | > th | dose independent | rect. | 16 | 1 |
| 455 | 130.76 | temperature | 30.0 | 14400 | < th | dose independent | rect. | 10 | 9 |
| 458 | 130.76 | temperature | 30.0 | 14400 | < th | dose independent | rect. | 10 | 15 |
| 463 | 130.77 | temperature | 30.0 | 14400 | > th | dose independent | rect. | 10 | 9 |
| 501 | 130.79 | wind | 3.0 | 43200 | > th | dose dependent | rect. | 5 | 4 |
| 576 | 130.93 | precipitation | 0.1 | 43200 | > th | dose dependent | rect. | 3 | 18 |
| 595 | 130.94 | temperature | 30.0 | 14400 | < th | dose independent | rect. | 24 | 19 |
| 612 | 130.95 | temperature | 30.0 | 14400 | < th | dose independent | no | NA | NA |
| 673 | 130.99 | temperature | 30.0 | 14400 | > th | dose independent | no | NA | NA |
| 787 | 131.17 | humidity | 70.0 | 14400 | < th | dose dependent | rect. | 18 | 1 |
| 792 | 131.19 | temperature | 30.0 | 14400 | < th | dose independent | rect. | 17 | 23 |
| 797 | 131.22 | temperature | 30.0 | 14400 | > th | dose independent | rect. | 17 | 23 |
| 881 | 131.49 | wind | 5.0 | 43200 | < th | dose dependent | rect. | 3 | 2 |
| 891 | 131.53 | precipitation | 0.1 | 43200 | > th | dose dependent | rect. | 17 | 15 |
| 983 | 131.76 | temperature | 30.0 | 14400 | > th | dose dependent | no | NA | NA |