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Notice!
This gene did NOT pass the analysis criteria (log2(expression) > 5 in more than 80% of samples & normality of residuals was not rejected).
The modeling results may be unreliable.

Os03g0757200

blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II

Description : UDP-glucuronosyl/UDP-glucosyltransferase family protein.


log2(Expression) ~ Norm(μ, σ2)

μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8

par. value (S.E.)
α : 11.3 (0.0741) R2 : 0.692
β1 : -1.6 (0.218) R2dD : 0.0537 R2D : -0.117
β2 : 3.4 (0.129) R2dC : 0.462 R2C : 0.45
β3 : -14.6 (1.16) R2dE : 1.9 R2E : -1.52
β4 : -- (--) R2dD*C : -- R2D*C : --
β5 : -34.7 (3.18) R2dD*E : 1.43 R2D*E : -1.46
γ1 : -1.28 (0.112) R2dN8 : 0.129 R2N8 : -0.0903
σ : 0.94
deviance : 407.74
__
_____
C
peak time of C : 7.52
E
wheather : radiation
threshold : 0.7201
memory length : 1746
response mode : < th
dose dependency : dose dependent
G
type of G : rect.
peak or start time of G : 9.1
open length of G : 7.98

__

Dependence on each variable

Residual plot

Process of the parameter reduction
(fixed parameters. wheather = radiation, response mode = < th, dose dependency = dose dependent, type of G = rect.)

deviance σ α β1 β2 β3 β4 β5 γ1 peak time of C threshold memory length peak or start time of G open length of G
405.76 0.946 11.3 -1.57 3.36 -14.7 1.34 -34.8 -1.29 7.56 0.8112 1656 9.1 7.98
580.57 1.13 11.8 -0.27 3.44 -1.16 2.03 -- -1.12 7.6 0.8112 1656 9.1 7.98
407.74 0.94 11.3 -1.6 3.4 -14.6 -- -34.7 -1.28 7.52 0.7201 1746 9.1 7.98
469.62 1.01 12 -0.59 3.32 -2.45 -- -- -1.68 7.02 42.46 1163 8.79 8.16
1017.42 1.49 11.3 -1.6 -- -14.6 -- -34.7 -1.28 -- 0.7201 1746 9.1 8.2
583.69 1.13 11.8 -0.213 3.45 -- 1.94 -- -1.11 7.58 -- -- -- --
594.26 1.14 11.8 -0.167 3.46 -- -- -- -1.11 7.56 -- -- -- --
547.56 1.09 12 -0.493 -- -4.53 -- -- -1.39 -- 89.38 687 9.74 7.53
446.74 0.984 11.9 -- 3.24 -2.53 -- -- -1.5 6.56 64.14 1230 10.8 5.87
1234.73 1.64 11.9 -0.116 -- -- -- -- -1.06 -- -- -- -- --
594.99 1.14 11.8 -- 3.46 -- -- -- -1.09 7.56 -- -- -- --
547.41 1.09 11.9 -- -- -4.26 -- -- -1.26 -- 99.54 691 9.96 7.22
1235.09 1.64 11.9 -- -- -- -- -- -1.04 -- -- -- -- --

Results of the grid search

Summarized heatmap of deviance
 Histogram

Local optima within top1000 grid-points

rank deviance wheather threshold memory length response mode dose dependency type of G peak or start time of G open length of G
1 438.14 radiation 1.0 1440 < th dose dependent rect. 9 8
9 448.47 humidity 80.0 1440 < th dose independent rect. 7 8
15 449.40 humidity 80.0 1440 > th dose independent rect. 6 11
16 449.45 humidity 80.0 1440 > th dose independent rect. 7 9
36 452.09 humidity 70.0 1440 > th dose independent rect. 11 3
38 452.46 humidity 70.0 1440 < th dose independent rect. 11 3
39 452.48 humidity 80.0 1440 < th dose independent sin 1 NA
45 452.71 humidity 80.0 1440 > th dose independent sin 1 NA
49 452.82 humidity 70.0 1440 < th dose independent rect. 10 5
58 453.53 humidity 90.0 720 > th dose dependent rect. 20 1
103 456.01 humidity 70.0 1440 > th dose independent rect. 20 19
169 457.55 humidity 60.0 720 > th dose dependent rect. 11 15
173 457.95 humidity 60.0 720 > th dose dependent rect. 11 22
193 458.27 humidity 60.0 1440 > th dose dependent rect. 11 3
225 459.20 humidity 60.0 720 > th dose dependent rect. 5 21
227 459.22 radiation 1.0 1440 > th dose independent rect. 11 4
233 459.38 radiation 1.0 1440 > th dose independent rect. 9 6
247 459.67 humidity 60.0 720 > th dose dependent rect. 3 23
274 460.12 radiation 1.0 1440 < th dose independent rect. 11 1
275 460.12 radiation 1.0 1440 < th dose dependent rect. 11 1
284 460.49 humidity 60.0 720 > th dose dependent sin 18 NA
292 460.67 humidity 60.0 720 > th dose dependent rect. 5 23
296 460.74 wind 3.0 43200 > th dose independent rect. 7 2
297 460.75 precipitation 0.1 14400 < th dose independent rect. 9 7
298 460.75 precipitation 0.1 14400 < th dose dependent rect. 9 7
304 460.87 humidity 90.0 720 > th dose dependent rect. 20 3
319 461.27 wind 3.0 43200 > th dose independent rect. 4 5
341 461.56 humidity 90.0 14400 < th dose independent rect. 13 1
369 461.98 precipitation 0.1 14400 > th dose independent rect. 9 7
373 462.02 humidity 60.0 720 > th dose dependent rect. 1 23
381 462.14 precipitation 0.1 14400 < th dose independent rect. 11 5
382 462.14 precipitation 0.1 14400 < th dose dependent rect. 11 5
383 462.14 precipitation 0.1 14400 > th dose dependent rect. 9 7
432 462.92 wind 3.0 43200 < th dose independent rect. 6 3
456 463.05 wind 5.0 43200 < th dose dependent rect. 24 9
457 463.06 wind 3.0 43200 < th dose independent rect. 4 5
458 463.07 humidity 60.0 720 > th dose dependent no NA NA
462 463.15 wind 3.0 43200 > th dose independent rect. 24 9
473 463.30 wind 1.0 43200 > th dose dependent rect. 24 9
482 463.43 humidity 60.0 1440 > th dose dependent rect. 4 12
491 463.59 wind 3.0 43200 < th dose independent rect. 24 9
524 464.02 wind 3.0 43200 > th dose dependent rect. 6 2
558 464.48 humidity 60.0 1440 > th dose dependent rect. 9 7
578 464.63 humidity 60.0 720 > th dose dependent rect. 20 23
598 464.82 radiation 1.0 1440 < th dose independent rect. 9 6
609 464.86 humidity 60.0 720 > th dose dependent rect. 22 23
626 465.00 humidity 90.0 1440 < th dose dependent rect. 12 2
636 465.07 humidity 60.0 720 > th dose dependent rect. 18 23
700 465.65 humidity 60.0 720 > th dose dependent rect. 16 23
707 465.77 humidity 70.0 1440 < th dose independent rect. 10 23
734 465.95 radiation 1.0 1440 < th dose independent rect. 13 2
740 465.98 wind 9.0 43200 < th dose dependent rect. 3 6
742 465.99 humidity 60.0 1440 > th dose dependent sin 0 NA
779 466.06 humidity 70.0 1440 < th dose independent no NA NA
859 466.29 wind 5.0 43200 < th dose dependent rect. 24 4
966 467.08 radiation 20.0 1440 < th dose dependent rect. 11 2