FiT-DB / Search/ Help/ Sample detail


Notice!
This gene did NOT pass the analysis criteria (log2(expression) > 5 in more than 80% of samples & normality of residuals was not rejected).
The modeling results may be unreliable.

Os03g0757000

blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II

Description : UDP-glucuronosyl/UDP-glucosyltransferase family protein.


log2(Expression) ~ Norm(μ, σ2)

μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8

par. value (S.E.)
α : 3.48 (0.0237) R2 : 0.0134
β1 : -- (--) R2dD : -- R2D : --
β2 : -- (--) R2dC : -- R2C : --
β3 : -- (--) R2dE : -- R2E : --
β4 : -- (--) R2dD*C : -- R2D*C : --
β5 : -- (--) R2dD*E : -- R2D*E : --
γ1 : -0.124 (0.0499) R2dN8 : 0.0173 R2N8 : 0.0134
σ : 0.446
deviance : 91.27
__
_____
C
peak time of C : --
E
wheather : --
threshold : --
memory length : --
response mode : --
dose dependency : --
G
type of G : --
peak or start time of G : --
open length of G : --

__

Dependence on each variable

Residual plot

Process of the parameter reduction
(fixed parameters. wheather = precipitation, response mode = > th, dose dependency = dose dependent, type of G = no)

deviance σ α β1 β2 β3 β4 β5 γ1 peak time of C threshold memory length peak or start time of G open length of G
76.04 0.406 3.47 0.0714 0.207 2.45 -0.093 3.67 -0.112 5.9 0.8295 10 -- --
76.04 0.409 3.48 0.0635 0.207 3.5 -0.092 -- -0.112 5.9 0.8623 10 -- --
76.06 0.406 3.47 0.072 0.207 2.3 -- 4.13 -0.111 5.95 0.8228 9 -- --
76.06 0.409 3.48 0.063 0.207 3.49 -- -- -0.111 5.95 0.8092 9 -- --
78.27 0.412 3.48 0.0777 -- 2.31 -- 4.4 -0.106 -- 0.8065 9 -- --
88.12 0.44 3.48 0.096 0.234 -- 0.076 -- -0.118 5.74 -- -- -- --
88.13 0.44 3.48 0.0964 0.235 -- -- -- -0.118 5.72 -- -- -- --
78.27 0.414 3.48 0.0682 -- 3.58 -- -- -0.106 -- 0.776 9 -- --
76.17 0.409 3.48 -- 0.207 3.51 -- -- -0.118 5.94 0.7925 9 -- --
90.99 0.446 3.48 0.104 -- -- -- -- -0.112 -- -- -- -- --
88.37 0.44 3.48 -- 0.236 -- -- -- -0.129 5.71 -- -- -- --
78.39 0.414 3.48 -- -- 3.59 -- -- -0.114 -- 0.776 9 -- --
91.27 0.446 3.48 -- -- -- -- -- -0.124 -- -- -- -- --

Results of the grid search

Summarized heatmap of deviance
Histogram

Local optima within top1000 grid-points

rank deviance wheather threshold memory length response mode dose dependency type of G peak or start time of G open length of G
1 73.24 precipitation 0.1 10 < th dose independent rect. 3 23
2 73.24 precipitation 0.1 10 < th dose dependent rect. 3 23
3 75.70 wind 5.0 90 > th dose dependent rect. 3 4
4 75.74 wind 3.0 10 > th dose independent rect. 4 1
6 75.74 wind 3.0 10 > th dose dependent rect. 4 1
8 75.77 wind 5.0 90 > th dose independent rect. 3 4
10 75.79 precipitation 0.1 30 > th dose dependent rect. 1 5
14 75.80 precipitation 0.1 30 > th dose dependent rect. 3 3
27 75.87 precipitation 0.1 30 > th dose independent rect. 3 3
232 76.33 precipitation 0.1 10 > th dose dependent sin 5 NA
378 76.60 precipitation 0.1 10 < th dose independent sin 6 NA
379 76.60 precipitation 0.1 10 < th dose dependent sin 6 NA
392 76.62 precipitation 0.1 10 > th dose independent sin 5 NA
706 77.87 precipitation 0.1 10 > th dose dependent no NA NA
894 78.87 precipitation 0.1 10 < th dose independent rect. 11 23
895 78.87 precipitation 0.1 10 < th dose dependent rect. 11 23
982 79.27 precipitation 0.1 10 > th dose independent no NA NA
983 79.27 precipitation 0.1 10 < th dose independent no NA NA