Os03g0755000
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Similar to Serine/threonine kinase (Fragment).
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Os03g0755000 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Similar to Serine/threonine kinase (Fragment).
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = temperature,
response mode = > th, dose dependency = dose dependent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 15.5 | 0.185 | 10.9 | 0.231 | 0.025 | -0.45 | 0.054 | 0.907 | 0.15 | 7.7 | 15.37 | 352 | -- | -- |
| 16.12 | 0.187 | 11 | 0.0929 | 0.033 | -0.373 | -0.0179 | -- | 0.114 | 7.53 | 16.32 | 334 | -- | -- |
| 15.5 | 0.183 | 10.9 | 0.227 | 0.0241 | -0.455 | -- | 0.87 | 0.149 | 8.53 | 15.3 | 352 | -- | -- |
| 16.05 | 0.187 | 11 | 0.0863 | 0.0259 | -0.454 | -- | -- | 0.111 | 9.72 | 14.56 | 332 | -- | -- |
| 15.53 | 0.184 | 10.9 | 0.233 | -- | -0.469 | -- | 0.875 | 0.152 | -- | 15.4 | 360 | -- | -- |
| 18.23 | 0.2 | 11 | -0.0124 | 0.143 | -- | -0.0499 | -- | 0.0449 | 5.86 | -- | -- | -- | -- |
| 18.24 | 0.2 | 11 | -0.0128 | 0.143 | -- | -- | -- | 0.0451 | 5.88 | -- | -- | -- | -- |
| 16.08 | 0.187 | 11 | 0.0877 | -- | -0.463 | -- | -- | 0.112 | -- | 14.2 | 355 | -- | -- |
| 16.22 | 0.188 | 11 | -- | 0.0352 | -0.408 | -- | -- | 0.0959 | 8.49 | 14.65 | 320 | -- | -- |
| 19.29 | 0.205 | 11 | -0.00848 | -- | -- | -- | -- | 0.0484 | -- | -- | -- | -- | -- |
| 18.24 | 0.2 | 11 | -- | 0.143 | -- | -- | -- | 0.0465 | 5.89 | -- | -- | -- | -- |
| 16.27 | 0.188 | 11 | -- | -- | -0.428 | -- | -- | 0.0995 | -- | 14.7 | 352 | -- | -- |
| 19.3 | 0.205 | 11 | -- | -- | -- | -- | -- | 0.0494 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 15.08 | temperature | 15 | 30 | > th | dose dependent | rect. | 23 | 23 |
| 2 | 15.10 | temperature | 15 | 270 | > th | dose dependent | rect. | 22 | 20 |
| 7 | 15.13 | temperature | 15 | 270 | > th | dose dependent | rect. | 23 | 18 |
| 11 | 15.16 | temperature | 10 | 720 | > th | dose dependent | rect. | 19 | 16 |
| 20 | 15.22 | temperature | 20 | 720 | > th | dose dependent | sin | 10 | NA |
| 26 | 15.24 | temperature | 10 | 720 | > th | dose dependent | sin | 10 | NA |
| 31 | 15.25 | temperature | 10 | 720 | > th | dose dependent | rect. | 16 | 19 |
| 35 | 15.26 | temperature | 20 | 30 | > th | dose dependent | rect. | 1 | 17 |
| 70 | 15.33 | temperature | 15 | 720 | > th | dose dependent | rect. | 23 | 5 |
| 157 | 15.43 | temperature | 30 | 270 | < th | dose dependent | rect. | 1 | 22 |
| 158 | 15.44 | temperature | 10 | 720 | > th | dose dependent | rect. | 23 | 8 |
| 206 | 15.48 | temperature | 30 | 10 | < th | dose dependent | rect. | 5 | 21 |
| 214 | 15.49 | temperature | 10 | 270 | > th | dose dependent | rect. | 6 | 23 |
| 217 | 15.50 | temperature | 30 | 720 | < th | dose dependent | rect. | 20 | 13 |
| 227 | 15.51 | temperature | 10 | 270 | > th | dose dependent | sin | 6 | NA |
| 237 | 15.52 | temperature | 25 | 1440 | > th | dose independent | rect. | 11 | 15 |
| 238 | 15.52 | temperature | 25 | 1440 | < th | dose independent | rect. | 11 | 15 |
| 254 | 15.52 | temperature | 30 | 10 | < th | dose dependent | rect. | 5 | 19 |
| 274 | 15.53 | temperature | 20 | 30 | > th | dose dependent | rect. | 10 | 23 |
| 282 | 15.54 | temperature | 30 | 720 | < th | dose dependent | sin | 10 | NA |
| 306 | 15.55 | temperature | 30 | 720 | < th | dose dependent | rect. | 20 | 10 |
| 332 | 15.56 | temperature | 20 | 1440 | > th | dose dependent | rect. | 12 | 13 |
| 353 | 15.57 | temperature | 15 | 270 | > th | dose dependent | no | NA | NA |
| 354 | 15.57 | temperature | 30 | 270 | < th | dose dependent | sin | 7 | NA |
| 377 | 15.58 | temperature | 25 | 1440 | > th | dose independent | rect. | 11 | 11 |
| 383 | 15.58 | temperature | 25 | 1440 | > th | dose dependent | rect. | 13 | 2 |
| 405 | 15.59 | temperature | 20 | 1440 | > th | dose dependent | rect. | 12 | 10 |
| 427 | 15.60 | temperature | 25 | 1440 | > th | dose dependent | rect. | 12 | 5 |
| 442 | 15.61 | temperature | 25 | 1440 | < th | dose independent | rect. | 11 | 11 |
| 473 | 15.62 | temperature | 25 | 1440 | < th | dose independent | sin | 17 | NA |
| 481 | 15.62 | temperature | 20 | 1440 | > th | dose dependent | sin | 16 | NA |
| 505 | 15.63 | temperature | 25 | 1440 | > th | dose independent | sin | 17 | NA |
| 507 | 15.63 | temperature | 25 | 1440 | < th | dose independent | rect. | 10 | 3 |
| 508 | 15.63 | temperature | 25 | 1440 | > th | dose independent | rect. | 10 | 4 |
| 548 | 15.64 | temperature | 25 | 1440 | > th | dose independent | rect. | 11 | 2 |
| 575 | 15.64 | temperature | 15 | 270 | > th | dose dependent | rect. | 8 | 23 |
| 630 | 15.66 | temperature | 20 | 30 | > th | dose dependent | rect. | 6 | 23 |
| 632 | 15.66 | temperature | 30 | 270 | < th | dose dependent | rect. | 16 | 23 |
| 880 | 15.73 | temperature | 30 | 270 | < th | dose dependent | no | NA | NA |
| 943 | 15.74 | temperature | 30 | 270 | < th | dose dependent | rect. | 11 | 23 |