Os03g0752800
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : MADS14 protein.
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Os03g0752800 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : MADS14 protein.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = radiation,
response mode = < th, dose dependency = dose dependent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 422.78 | 0.966 | 9.97 | 18.4 | 0.99 | -3.75 | 0.287 | -23.4 | 2.17 | 4.07 | 1.298 | 15811 | -- | -- |
| 625.48 | 1.16 | 10.9 | 14.2 | 1.14 | -3.57 | 0.469 | -- | 0.538 | 3.23 | 345.4 | 28751 | -- | -- |
| 422.37 | 0.957 | 9.96 | 18.4 | 0.986 | -3.72 | -- | -23.4 | 2.19 | 4.12 | 1.256 | 15784 | -- | -- |
| 557.01 | 1.1 | 11.1 | 13.9 | 1.1 | -3.69 | -- | -- | -0.0334 | 4 | 436.7 | 21629 | -- | -- |
| 474.49 | 1.01 | 9.9 | 18.6 | -- | -4 | -- | -24.3 | 2.28 | -- | 1.1 | 15778 | -- | -- |
| 1043.47 | 1.51 | 10.7 | 13.1 | 1.2 | -- | 0.875 | -- | 1.24 | 3.6 | -- | -- | -- | -- |
| 1045.75 | 1.51 | 10.8 | 13.1 | 1.21 | -- | -- | -- | 1.24 | 3.7 | -- | -- | -- | -- |
| 618.82 | 1.16 | 11.1 | 13.9 | -- | -3.69 | -- | -- | -0.071 | -- | 443.1 | 21471 | -- | -- |
| 4814.15 | 3.23 | 11.3 | -- | 1.29 | -4.3 | -- | -- | -1.2 | 3.29 | 327.6 | 1454 | -- | -- |
| 1126.33 | 1.57 | 10.8 | 13.1 | -- | -- | -- | -- | 1.27 | -- | -- | -- | -- | -- |
| 5564.72 | 3.49 | 11.1 | -- | 1.46 | -- | -- | -- | -0.219 | 3.62 | -- | -- | -- | -- |
| 4863.63 | 3.25 | 11.3 | -- | -- | -4.63 | -- | -- | -1.23 | -- | 1328 | 1362 | -- | -- |
| 5683.9 | 3.52 | 11.1 | -- | -- | -- | -- | -- | -0.187 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 229.99 | temperature | 20.0 | 43200 | > th | dose independent | rect. | 6 | 3 |
| 2 | 230.05 | temperature | 20.0 | 43200 | < th | dose independent | rect. | 6 | 3 |
| 7 | 232.42 | temperature | 20.0 | 43200 | > th | dose independent | rect. | 4 | 14 |
| 17 | 234.38 | temperature | 20.0 | 43200 | < th | dose independent | rect. | 3 | 16 |
| 23 | 234.89 | temperature | 20.0 | 43200 | > th | dose independent | sin | 1 | NA |
| 40 | 235.67 | temperature | 20.0 | 43200 | < th | dose independent | rect. | 8 | 1 |
| 44 | 235.85 | temperature | 20.0 | 43200 | < th | dose independent | sin | 2 | NA |
| 90 | 238.56 | temperature | 20.0 | 43200 | > th | dose independent | rect. | 8 | 1 |
| 259 | 248.63 | precipitation | 0.1 | 43200 | < th | dose independent | rect. | 9 | 1 |
| 260 | 248.63 | precipitation | 0.1 | 43200 | < th | dose dependent | rect. | 9 | 1 |
| 271 | 249.17 | precipitation | 0.1 | 43200 | > th | dose independent | rect. | 9 | 1 |
| 272 | 249.17 | precipitation | 0.1 | 43200 | > th | dose dependent | rect. | 9 | 1 |
| 286 | 249.82 | temperature | 20.0 | 43200 | < th | dose independent | rect. | 6 | 23 |
| 288 | 249.88 | temperature | 20.0 | 43200 | < th | dose independent | rect. | 15 | 23 |
| 289 | 249.94 | temperature | 20.0 | 43200 | < th | dose independent | no | NA | NA |
| 314 | 250.58 | temperature | 25.0 | 43200 | < th | dose dependent | rect. | 7 | 6 |
| 344 | 251.34 | temperature | 20.0 | 43200 | > th | dose independent | rect. | 6 | 23 |
| 349 | 251.48 | temperature | 20.0 | 43200 | < th | dose independent | rect. | 8 | 23 |
| 350 | 251.49 | temperature | 20.0 | 43200 | > th | dose independent | no | NA | NA |
| 351 | 251.52 | temperature | 20.0 | 43200 | > th | dose independent | rect. | 15 | 23 |
| 417 | 253.05 | temperature | 25.0 | 43200 | < th | dose dependent | rect. | 8 | 2 |
| 516 | 255.91 | radiation | 1.0 | 43200 | < th | dose independent | rect. | 6 | 9 |
| 525 | 256.18 | radiation | 1.0 | 43200 | > th | dose independent | rect. | 6 | 9 |
| 540 | 256.71 | temperature | 20.0 | 43200 | > th | dose independent | rect. | 17 | 1 |
| 601 | 259.60 | temperature | 20.0 | 43200 | < th | dose independent | rect. | 2 | 1 |
| 602 | 259.77 | temperature | 20.0 | 43200 | > th | dose independent | rect. | 2 | 1 |
| 636 | 261.44 | temperature | 25.0 | 43200 | < th | dose dependent | sin | 1 | NA |
| 713 | 264.84 | temperature | 25.0 | 43200 | < th | dose dependent | rect. | 12 | 1 |
| 781 | 267.07 | temperature | 25.0 | 43200 | < th | dose dependent | rect. | 7 | 18 |
| 819 | 267.97 | temperature | 20.0 | 43200 | < th | dose independent | rect. | 17 | 2 |
| 844 | 268.57 | radiation | 1.0 | 43200 | < th | dose dependent | rect. | 6 | 1 |
| 915 | 269.98 | radiation | 1.0 | 43200 | < th | dose dependent | rect. | 1 | 4 |
| 939 | 270.58 | radiation | 1.0 | 43200 | < th | dose dependent | rect. | 3 | 2 |
| 998 | 271.53 | radiation | 1.0 | 43200 | < th | dose dependent | rect. | 19 | 10 |