Os03g0752500
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Non-protein coding transcript, unclassifiable transcript.
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Os03g0752500 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Non-protein coding transcript, unclassifiable transcript.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = temperature,
response mode = > th, dose dependency = dose dependent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 437.77 | 0.983 | 6.26 | -2.57 | 5.77 | 2.54 | 0.647 | -7.93 | -0.901 | 4.81 | 24.39 | 1348 | -- | -- |
| 473.04 | 1.01 | 6.06 | -1.17 | 5.9 | 2.31 | -0.178 | -- | -0.596 | 4.76 | 19.47 | 5486 | -- | -- |
| 438.01 | 0.975 | 6.25 | -2.41 | 5.75 | 2.5 | -- | -7.13 | -0.94 | 4.82 | 23.7 | 1318 | -- | -- |
| 461.86 | 1 | 6.01 | -0.395 | 5.75 | 1.83 | -- | -- | -0.443 | 4.81 | 22.8 | 1302 | -- | -- |
| 2127.16 | 2.16 | 5.88 | 1.11 | -- | -3.72 | -- | 0.825 | 0.542 | -- | 24 | 1258 | -- | -- |
| 581.38 | 1.13 | 5.93 | 0.232 | 5.95 | -- | 0.593 | -- | -0.0525 | 4.71 | -- | -- | -- | -- |
| 582.3 | 1.13 | 5.93 | 0.229 | 5.96 | -- | -- | -- | -0.0556 | 4.7 | -- | -- | -- | -- |
| 2127.56 | 2.16 | 5.89 | 0.999 | -- | -3.66 | -- | -- | 0.51 | -- | 24 | 1258 | -- | -- |
| 465.76 | 1.01 | 6 | -- | 5.75 | 1.77 | -- | -- | -0.378 | 4.82 | 22.8 | 1296 | -- | -- |
| 2464.82 | 2.32 | 5.98 | 0.455 | -- | -- | -- | -- | 0.0999 | -- | -- | -- | -- | -- |
| 583.68 | 1.13 | 5.94 | -- | 5.96 | -- | -- | -- | -0.0811 | 4.7 | -- | -- | -- | -- |
| 2153.27 | 2.17 | 5.92 | -- | -- | -3.5 | -- | -- | 0.384 | -- | 24 | 1258 | -- | -- |
| 2470.28 | 2.32 | 6 | -- | -- | -- | -- | -- | 0.0494 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 425.34 | temperature | 25 | 1440 | > th | dose dependent | rect. | 14 | 3 |
| 38 | 432.20 | temperature | 25 | 1440 | > th | dose dependent | rect. | 13 | 19 |
| 76 | 434.82 | temperature | 25 | 1440 | > th | dose dependent | sin | 18 | NA |
| 141 | 439.90 | temperature | 25 | 1440 | > th | dose dependent | rect. | 6 | 13 |
| 252 | 441.78 | temperature | 25 | 1440 | > th | dose dependent | no | NA | NA |
| 290 | 445.28 | humidity | 90 | 43200 | > th | dose dependent | rect. | 22 | 2 |
| 310 | 447.02 | humidity | 90 | 43200 | > th | dose independent | rect. | 21 | 3 |
| 312 | 447.09 | humidity | 90 | 43200 | > th | dose independent | rect. | 21 | 1 |
| 330 | 449.11 | temperature | 25 | 1440 | > th | dose independent | rect. | 15 | 8 |
| 338 | 449.44 | temperature | 25 | 1440 | < th | dose independent | rect. | 14 | 10 |
| 364 | 450.58 | humidity | 90 | 43200 | < th | dose independent | rect. | 20 | 5 |
| 366 | 450.69 | radiation | 1 | 1440 | < th | dose dependent | rect. | 22 | 7 |
| 392 | 451.85 | temperature | 25 | 4320 | > th | dose independent | rect. | 10 | 1 |
| 405 | 452.46 | temperature | 25 | 4320 | < th | dose independent | rect. | 17 | 1 |
| 439 | 453.57 | temperature | 25 | 4320 | > th | dose independent | rect. | 17 | 1 |
| 473 | 454.44 | temperature | 25 | 4320 | < th | dose independent | rect. | 7 | 6 |
| 488 | 454.75 | temperature | 25 | 1440 | > th | dose independent | rect. | 6 | 18 |
| 507 | 455.15 | temperature | 25 | 4320 | > th | dose independent | rect. | 7 | 6 |
| 523 | 455.50 | temperature | 25 | 1440 | < th | dose independent | rect. | 6 | 18 |
| 527 | 455.55 | temperature | 25 | 1440 | > th | dose independent | sin | 17 | NA |
| 537 | 455.71 | temperature | 25 | 4320 | < th | dose independent | rect. | 10 | 1 |
| 554 | 456.03 | temperature | 25 | 1440 | < th | dose independent | sin | 17 | NA |
| 556 | 456.05 | temperature | 25 | 1440 | > th | dose independent | rect. | 19 | 1 |
| 567 | 456.27 | temperature | 25 | 1440 | < th | dose independent | rect. | 19 | 1 |
| 568 | 456.27 | temperature | 25 | 4320 | > th | dose independent | rect. | 7 | 11 |
| 571 | 456.29 | temperature | 25 | 4320 | < th | dose independent | rect. | 6 | 12 |
| 732 | 458.40 | humidity | 90 | 43200 | > th | dose dependent | rect. | 18 | 12 |
| 773 | 458.80 | humidity | 90 | 43200 | > th | dose dependent | sin | 14 | NA |
| 781 | 458.85 | temperature | 25 | 4320 | > th | dose independent | sin | 1 | NA |
| 808 | 459.07 | radiation | 40 | 14400 | < th | dose dependent | rect. | 22 | 7 |
| 809 | 459.08 | temperature | 25 | 4320 | < th | dose independent | sin | 0 | NA |
| 832 | 459.28 | humidity | 60 | 270 | > th | dose dependent | rect. | 17 | 8 |
| 863 | 459.61 | temperature | 10 | 270 | > th | dose dependent | rect. | 2 | 17 |
| 895 | 460.01 | humidity | 90 | 43200 | > th | dose independent | sin | 14 | NA |
| 987 | 460.67 | humidity | 90 | 43200 | < th | dose independent | sin | 14 | NA |
| 993 | 460.73 | radiation | 1 | 14400 | < th | dose dependent | rect. | 2 | 3 |