Os03g0751400
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Similar to 50S ribosomal protein l6.
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Os03g0751400 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Similar to 50S ribosomal protein l6.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = temperature,
response mode = > th, dose dependency = dose independent, type of G = rect.)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 218.45 | 0.694 | 10.3 | -0.805 | 0.492 | -1.98 | 0.69 | 0.191 | -1.2 | 20.3 | 19.96 | 268 | 3.93 | 7.23 |
| 217.8 | 0.687 | 10.3 | -0.806 | 0.412 | -2 | 0.552 | -- | -1.2 | 19.9 | 19.91 | 257 | 3.85 | 7.52 |
| 218.68 | 0.689 | 10.3 | -0.82 | 0.414 | -1.96 | -- | 0.0326 | -1.19 | 19.9 | 19.9 | 249 | 3.85 | 7.57 |
| 218.47 | 0.688 | 10.3 | -0.824 | 0.392 | -1.98 | -- | -- | -1.2 | 20.1 | 19.93 | 254 | 3.78 | 7.64 |
| 224.43 | 0.698 | 10.3 | -0.839 | -- | -2.01 | -- | -0.0712 | -1.19 | -- | 19.5 | 241 | 3.73 | 7.93 |
| 284.85 | 0.791 | 10.3 | -0.962 | 2.18 | -- | 0.836 | -- | -1.3 | 21.7 | -- | -- | -- | -- |
| 287.5 | 0.794 | 10.3 | -0.994 | 2.17 | -- | -- | -- | -1.3 | 21.7 | -- | -- | -- | -- |
| 220.98 | 0.692 | 10.3 | -0.822 | -- | -2.25 | -- | -- | -1.18 | -- | 19.9 | 269 | 3.38 | 7.88 |
| 236.17 | 0.716 | 10.2 | -- | 0.391 | -1.97 | -- | -- | -1.12 | 19.9 | 20 | 257 | 3.72 | 7.73 |
| 568.66 | 1.11 | 10.3 | -0.974 | -- | -- | -- | -- | -1.31 | -- | -- | -- | -- | -- |
| 313.54 | 0.828 | 10.3 | -- | 2.17 | -- | -- | -- | -1.19 | 21.7 | -- | -- | -- | -- |
| 237.09 | 0.717 | 10.2 | -- | -- | -2.27 | -- | -- | -1.09 | -- | 19.9 | 293 | 3.12 | 8.23 |
| 593.66 | 1.14 | 10.3 | -- | -- | -- | -- | -- | -1.2 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 215.85 | humidity | 90.0 | 14400 | > th | dose dependent | rect. | 9 | 1 |
| 2 | 218.16 | humidity | 90.0 | 14400 | > th | dose dependent | rect. | 7 | 4 |
| 4 | 218.29 | humidity | 90.0 | 14400 | > th | dose dependent | rect. | 6 | 7 |
| 12 | 219.46 | temperature | 20.0 | 270 | > th | dose independent | rect. | 4 | 7 |
| 24 | 221.82 | wind | 3.0 | 43200 | > th | dose independent | rect. | 6 | 2 |
| 26 | 222.04 | humidity | 90.0 | 14400 | > th | dose dependent | rect. | 5 | 17 |
| 28 | 222.08 | wind | 3.0 | 43200 | < th | dose independent | rect. | 6 | 2 |
| 34 | 222.75 | humidity | 90.0 | 14400 | > th | dose independent | rect. | 9 | 1 |
| 45 | 223.27 | humidity | 90.0 | 14400 | > th | dose dependent | sin | 23 | NA |
| 58 | 223.76 | precipitation | 0.1 | 14400 | > th | dose independent | rect. | 6 | 8 |
| 60 | 223.95 | precipitation | 0.1 | 14400 | > th | dose independent | rect. | 7 | 3 |
| 61 | 223.95 | precipitation | 0.1 | 14400 | > th | dose dependent | rect. | 7 | 3 |
| 65 | 224.16 | precipitation | 0.1 | 14400 | > th | dose independent | rect. | 6 | 10 |
| 90 | 224.76 | precipitation | 0.1 | 14400 | < th | dose independent | rect. | 6 | 10 |
| 91 | 224.76 | precipitation | 0.1 | 14400 | < th | dose dependent | rect. | 6 | 10 |
| 98 | 224.90 | precipitation | 0.1 | 14400 | < th | dose independent | rect. | 5 | 5 |
| 99 | 224.90 | precipitation | 0.1 | 14400 | < th | dose dependent | rect. | 5 | 5 |
| 103 | 225.08 | precipitation | 0.1 | 14400 | > th | dose independent | rect. | 5 | 5 |
| 109 | 225.26 | precipitation | 0.1 | 14400 | < th | dose independent | rect. | 6 | 8 |
| 110 | 225.26 | precipitation | 0.1 | 14400 | < th | dose dependent | rect. | 6 | 8 |
| 114 | 225.47 | precipitation | 0.1 | 14400 | < th | dose independent | rect. | 7 | 3 |
| 115 | 225.47 | precipitation | 0.1 | 14400 | < th | dose dependent | rect. | 7 | 3 |
| 121 | 225.67 | temperature | 20.0 | 270 | > th | dose independent | rect. | 4 | 19 |
| 122 | 225.70 | humidity | 90.0 | 14400 | > th | dose independent | rect. | 6 | 5 |
| 131 | 225.85 | precipitation | 0.1 | 14400 | > th | dose dependent | rect. | 5 | 5 |
| 143 | 226.02 | wind | 1.0 | 43200 | > th | dose dependent | rect. | 6 | 2 |
| 154 | 226.26 | humidity | 90.0 | 14400 | > th | dose independent | rect. | 6 | 7 |
| 155 | 226.27 | wind | 5.0 | 43200 | < th | dose dependent | rect. | 6 | 1 |
| 180 | 226.83 | wind | 5.0 | 43200 | < th | dose dependent | rect. | 4 | 4 |
| 210 | 227.25 | humidity | 90.0 | 14400 | > th | dose independent | rect. | 20 | 3 |
| 263 | 227.94 | humidity | 90.0 | 14400 | > th | dose independent | rect. | 5 | 18 |
| 319 | 228.53 | humidity | 80.0 | 43200 | < th | dose independent | rect. | 5 | 2 |
| 322 | 228.58 | precipitation | 0.1 | 14400 | > th | dose independent | rect. | 9 | 1 |
| 323 | 228.58 | precipitation | 0.1 | 14400 | > th | dose dependent | rect. | 9 | 1 |
| 327 | 228.61 | humidity | 80.0 | 14400 | < th | dose independent | rect. | 10 | 1 |
| 350 | 228.79 | humidity | 90.0 | 14400 | < th | dose independent | rect. | 6 | 5 |
| 354 | 228.81 | humidity | 90.0 | 14400 | < th | dose independent | rect. | 20 | 1 |
| 360 | 228.86 | humidity | 90.0 | 14400 | < th | dose independent | rect. | 6 | 8 |
| 366 | 228.94 | precipitation | 0.1 | 14400 | > th | dose dependent | rect. | 6 | 8 |
| 373 | 229.00 | humidity | 90.0 | 14400 | > th | dose dependent | rect. | 21 | 2 |
| 403 | 229.22 | humidity | 90.0 | 14400 | > th | dose dependent | rect. | 19 | 4 |
| 416 | 229.29 | humidity | 80.0 | 43200 | > th | dose independent | rect. | 4 | 3 |
| 442 | 229.43 | humidity | 90.0 | 14400 | > th | dose dependent | rect. | 15 | 23 |
| 449 | 229.53 | precipitation | 0.1 | 14400 | < th | dose independent | rect. | 9 | 1 |
| 450 | 229.53 | precipitation | 0.1 | 14400 | < th | dose dependent | rect. | 9 | 1 |
| 455 | 229.55 | humidity | 90.0 | 14400 | > th | dose dependent | no | NA | NA |
| 456 | 229.55 | humidity | 90.0 | 14400 | > th | dose dependent | rect. | 18 | 23 |
| 476 | 229.72 | precipitation | 0.1 | 14400 | > th | dose dependent | rect. | 6 | 10 |
| 503 | 229.91 | humidity | 90.0 | 14400 | < th | dose independent | rect. | 5 | 17 |
| 507 | 229.94 | humidity | 90.0 | 14400 | > th | dose dependent | rect. | 12 | 23 |
| 523 | 230.00 | precipitation | 0.1 | 14400 | > th | dose dependent | rect. | 4 | 9 |
| 559 | 230.21 | humidity | 90.0 | 14400 | > th | dose independent | sin | 0 | NA |
| 620 | 230.51 | humidity | 80.0 | 43200 | < th | dose dependent | rect. | 5 | 2 |
| 633 | 230.63 | humidity | 90.0 | 14400 | < th | dose independent | rect. | 8 | 1 |
| 638 | 230.64 | radiation | 40.0 | 270 | < th | dose independent | rect. | 4 | 21 |
| 642 | 230.65 | humidity | 80.0 | 43200 | < th | dose dependent | rect. | 2 | 6 |
| 716 | 231.00 | humidity | 80.0 | 14400 | > th | dose dependent | rect. | 18 | 1 |
| 727 | 231.04 | radiation | 1.0 | 14400 | < th | dose dependent | rect. | 7 | 1 |
| 751 | 231.20 | humidity | 80.0 | 14400 | > th | dose independent | rect. | 8 | 11 |
| 762 | 231.26 | humidity | 90.0 | 14400 | > th | dose dependent | rect. | 16 | 8 |
| 775 | 231.31 | humidity | 90.0 | 14400 | > th | dose independent | rect. | 18 | 20 |
| 863 | 231.69 | temperature | 25.0 | 14400 | < th | dose dependent | rect. | 9 | 1 |
| 922 | 231.93 | humidity | 90.0 | 14400 | < th | dose independent | sin | 23 | NA |
| 951 | 232.08 | humidity | 80.0 | 14400 | < th | dose independent | rect. | 10 | 9 |
| 956 | 232.10 | precipitation | 0.1 | 14400 | < th | dose independent | sin | 3 | NA |
| 958 | 232.10 | precipitation | 0.1 | 14400 | < th | dose dependent | sin | 3 | NA |
| 959 | 232.11 | precipitation | 0.1 | 14400 | > th | dose independent | sin | 3 | NA |
| 963 | 232.13 | radiation | 30.0 | 270 | < th | dose independent | rect. | 5 | 19 |
| 988 | 232.24 | radiation | 30.0 | 4320 | < th | dose independent | rect. | 3 | 4 |