Os03g0751100
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Similar to Isp4 protein-like.
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Os03g0751100 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Similar to Isp4 protein-like.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = radiation,
response mode = < th, dose dependency = dose independent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 62.74 | 0.372 | 12.9 | -0.329 | 1.55 | -0.712 | 1.77 | -1.13 | -0.221 | 5.15 | 18.13 | 20973 | -- | -- |
| 63.62 | 0.371 | 12.9 | -0.471 | 1.48 | -0.834 | 1.61 | -- | -0.281 | 5.1 | 30.5 | 22818 | -- | -- |
| 69.8 | 0.389 | 12.9 | -0.337 | 1.56 | -0.657 | -- | -1.2 | -0.23 | 4.93 | 20.56 | 21602 | -- | -- |
| 70.5 | 0.391 | 12.9 | -0.476 | 1.56 | -0.833 | -- | -- | -0.312 | 4.99 | 30.5 | 22395 | -- | -- |
| 191.76 | 0.645 | 12.9 | -0.389 | -- | -0.675 | -- | -1.14 | -0.249 | -- | 20.34 | 21532 | -- | -- |
| 82.98 | 0.427 | 12.8 | -0.552 | 1.54 | -- | 1.73 | -- | -0.029 | 5.04 | -- | -- | -- | -- |
| 90.33 | 0.445 | 12.8 | -0.556 | 1.55 | -- | -- | -- | -0.0378 | 4.88 | -- | -- | -- | -- |
| 194.33 | 0.649 | 12.9 | -0.411 | -- | -0.686 | -- | -- | -0.276 | -- | 21.87 | 21569 | -- | -- |
| 75.52 | 0.405 | 12.9 | -- | 1.58 | -0.845 | -- | -- | -0.28 | 5.01 | 32.81 | 22469 | -- | -- |
| 216.48 | 0.688 | 12.9 | -0.499 | -- | -- | -- | -- | 0.00215 | -- | -- | -- | -- | -- |
| 98.48 | 0.464 | 12.8 | -- | 1.54 | -- | -- | -- | 0.0242 | 4.89 | -- | -- | -- | -- |
| 198.7 | 0.657 | 12.9 | -- | -- | -0.853 | -- | -- | -0.224 | -- | 35.14 | 22934 | -- | -- |
| 223.05 | 0.697 | 12.8 | -- | -- | -- | -- | -- | 0.0575 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 59.83 | wind | 1 | 43200 | < th | dose dependent | rect. | 2 | 3 |
| 2 | 60.54 | temperature | 25 | 43200 | < th | dose independent | rect. | 19 | 1 |
| 3 | 60.57 | wind | 1 | 43200 | < th | dose independent | rect. | 2 | 3 |
| 4 | 60.62 | temperature | 25 | 43200 | > th | dose independent | rect. | 19 | 1 |
| 18 | 61.06 | wind | 1 | 43200 | > th | dose independent | rect. | 2 | 3 |
| 22 | 61.11 | wind | 3 | 14400 | > th | dose independent | rect. | 13 | 1 |
| 24 | 61.16 | wind | 3 | 14400 | < th | dose independent | rect. | 13 | 1 |
| 27 | 61.17 | temperature | 25 | 43200 | < th | dose independent | rect. | 13 | 10 |
| 36 | 61.22 | temperature | 25 | 43200 | > th | dose independent | rect. | 14 | 9 |
| 39 | 61.22 | temperature | 25 | 43200 | < th | dose independent | rect. | 10 | 15 |
| 40 | 61.23 | temperature | 25 | 43200 | < th | dose independent | sin | 17 | NA |
| 64 | 61.27 | temperature | 25 | 43200 | > th | dose independent | sin | 17 | NA |
| 71 | 61.27 | temperature | 25 | 43200 | > th | dose independent | rect. | 9 | 15 |
| 85 | 61.28 | temperature | 25 | 43200 | < th | dose independent | rect. | 6 | 17 |
| 104 | 61.30 | temperature | 25 | 43200 | > th | dose independent | rect. | 6 | 17 |
| 156 | 61.33 | temperature | 25 | 43200 | < th | dose independent | rect. | 18 | 21 |
| 169 | 61.34 | temperature | 25 | 43200 | > th | dose independent | rect. | 18 | 21 |
| 171 | 61.34 | temperature | 20 | 43200 | > th | dose dependent | rect. | 19 | 1 |
| 209 | 61.36 | humidity | 70 | 43200 | > th | dose dependent | rect. | 20 | 1 |
| 295 | 61.41 | temperature | 25 | 43200 | < th | dose independent | no | NA | NA |
| 320 | 61.42 | temperature | 25 | 43200 | < th | dose independent | rect. | 12 | 23 |
| 322 | 61.43 | temperature | 25 | 43200 | > th | dose independent | no | NA | NA |
| 345 | 61.44 | temperature | 25 | 43200 | > th | dose independent | rect. | 12 | 23 |
| 373 | 61.46 | temperature | 20 | 43200 | > th | dose dependent | rect. | 4 | 1 |
| 375 | 61.47 | wind | 3 | 14400 | > th | dose independent | rect. | 12 | 3 |
| 491 | 61.58 | temperature | 25 | 43200 | > th | dose independent | rect. | 7 | 4 |
| 523 | 61.60 | temperature | 25 | 43200 | > th | dose independent | rect. | 9 | 2 |
| 531 | 61.61 | temperature | 25 | 43200 | < th | dose independent | rect. | 6 | 5 |
| 570 | 61.65 | temperature | 25 | 43200 | < th | dose independent | rect. | 9 | 2 |
| 572 | 61.65 | temperature | 25 | 43200 | < th | dose independent | rect. | 4 | 9 |
| 584 | 61.65 | temperature | 20 | 43200 | > th | dose dependent | rect. | 17 | 12 |
| 586 | 61.65 | temperature | 20 | 43200 | > th | dose dependent | rect. | 17 | 18 |
| 627 | 61.68 | temperature | 20 | 43200 | > th | dose dependent | rect. | 10 | 1 |
| 659 | 61.70 | temperature | 25 | 43200 | < th | dose independent | sin | 3 | NA |
| 681 | 61.71 | temperature | 25 | 43200 | > th | dose independent | sin | 4 | NA |
| 697 | 61.71 | temperature | 20 | 43200 | > th | dose dependent | sin | 12 | NA |
| 703 | 61.71 | temperature | 20 | 43200 | > th | dose dependent | rect. | 3 | 8 |
| 746 | 61.72 | temperature | 20 | 43200 | > th | dose dependent | rect. | 3 | 20 |
| 806 | 61.74 | temperature | 20 | 43200 | > th | dose dependent | rect. | 9 | 21 |
| 839 | 61.75 | temperature | 20 | 43200 | > th | dose dependent | rect. | 9 | 14 |
| 881 | 61.76 | temperature | 20 | 43200 | > th | dose dependent | no | NA | NA |
| 965 | 61.77 | temperature | 20 | 43200 | > th | dose dependent | rect. | 21 | 23 |