Os03g0749500
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Similar to Exo-beta-glucanase.
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Os03g0749500 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Similar to Exo-beta-glucanase.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = temperature,
response mode = > th, dose dependency = dose dependent, type of G = rect.)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 391.04 | 0.929 | 10.6 | -3.72 | 2.83 | 2.93 | 1.22 | 0.338 | -1.39 | 3.05 | 8.999 | 263 | 0.621 | 18.3 |
| 390.75 | 0.921 | 10.6 | -3.77 | 2.82 | 2.95 | 1.1 | -- | -1.41 | 3.1 | 10.23 | 272 | 0.511 | 18.2 |
| 393.09 | 0.923 | 10.6 | -3.85 | 2.85 | 2.98 | -- | -0.831 | -1.43 | 2.97 | 8.595 | 268 | 0.617 | 18.1 |
| 394.5 | 0.925 | 10.6 | -3.79 | 2.84 | 2.94 | -- | -- | -1.4 | 2.96 | 8.451 | 267 | 0.6 | 18.1 |
| 552.23 | 1.09 | 10.7 | -4 | -- | 2.33 | -- | -0.14 | -1.46 | -- | 16.59 | 1358 | 0.0168 | 18.8 |
| 516.1 | 1.07 | 10.5 | -3.32 | 1.55 | -- | 0.993 | -- | -1.1 | 5 | -- | -- | -- | -- |
| 518.61 | 1.07 | 10.5 | -3.33 | 1.55 | -- | -- | -- | -1.11 | 4.98 | -- | -- | -- | -- |
| 524.7 | 1.07 | 10.6 | -3.87 | -- | 1.82 | -- | -- | -1.35 | -- | 24.27 | 1289 | 15.1 | 24 |
| 756.35 | 1.28 | 10.5 | -- | 2.75 | 2.6 | -- | -- | -0.926 | 2.85 | 4.497 | 260 | 0.667 | 18.2 |
| 645.23 | 1.19 | 10.6 | -3.27 | -- | -- | -- | -- | -1.07 | -- | -- | -- | -- | -- |
| 810.04 | 1.33 | 10.5 | -- | 1.49 | -- | -- | -- | -0.735 | 5.05 | -- | -- | -- | -- |
| 816.92 | 1.33 | 10.4 | -- | -- | -1.64 | -- | -- | -0.24 | -- | 15.11 | 46809 | 18.3 | 23.1 |
| 927.07 | 1.42 | 10.5 | -- | -- | -- | -- | -- | -0.703 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 393.39 | temperature | 10.0 | 270 | > th | dose dependent | rect. | 24 | 19 |
| 7 | 399.26 | temperature | 10.0 | 90 | > th | dose dependent | rect. | 3 | 17 |
| 17 | 402.62 | temperature | 10.0 | 10 | > th | dose dependent | rect. | 3 | 17 |
| 75 | 416.78 | radiation | 20.0 | 1440 | < th | dose independent | rect. | 16 | 1 |
| 78 | 417.03 | radiation | 20.0 | 1440 | < th | dose independent | rect. | 16 | 11 |
| 108 | 420.51 | temperature | 25.0 | 1440 | > th | dose dependent | rect. | 16 | 1 |
| 109 | 420.65 | temperature | 25.0 | 1440 | > th | dose dependent | rect. | 14 | 10 |
| 111 | 420.68 | radiation | 20.0 | 1440 | > th | dose dependent | rect. | 16 | 16 |
| 122 | 421.04 | temperature | 25.0 | 1440 | > th | dose dependent | rect. | 15 | 4 |
| 128 | 421.06 | temperature | 25.0 | 1440 | > th | dose dependent | sin | 16 | NA |
| 218 | 422.45 | radiation | 30.0 | 1440 | < th | dose independent | rect. | 21 | 11 |
| 230 | 422.64 | radiation | 30.0 | 1440 | > th | dose independent | rect. | 7 | 1 |
| 252 | 422.78 | radiation | 10.0 | 1440 | > th | dose dependent | rect. | 16 | 14 |
| 255 | 422.80 | radiation | 10.0 | 1440 | > th | dose dependent | rect. | 16 | 2 |
| 321 | 423.51 | temperature | 10.0 | 270 | > th | dose dependent | rect. | 14 | 15 |
| 347 | 423.64 | temperature | 25.0 | 1440 | > th | dose dependent | no | NA | NA |
| 359 | 423.75 | radiation | 30.0 | 1440 | < th | dose independent | rect. | 7 | 1 |
| 360 | 423.75 | temperature | 25.0 | 1440 | > th | dose dependent | rect. | 21 | 23 |
| 400 | 424.26 | temperature | 25.0 | 1440 | > th | dose dependent | rect. | 16 | 23 |
| 457 | 425.36 | temperature | 30.0 | 270 | < th | dose dependent | rect. | 5 | 20 |
| 458 | 425.39 | temperature | 20.0 | 270 | > th | dose dependent | rect. | 12 | 21 |
| 471 | 425.88 | temperature | 10.0 | 270 | > th | dose dependent | rect. | 24 | 9 |
| 495 | 426.26 | temperature | 10.0 | 270 | > th | dose dependent | rect. | 13 | 6 |
| 501 | 426.39 | temperature | 30.0 | 1440 | < th | dose independent | rect. | 13 | 14 |
| 503 | 426.40 | temperature | 30.0 | 270 | < th | dose independent | rect. | 18 | 20 |
| 506 | 426.43 | temperature | 30.0 | 1440 | < th | dose independent | rect. | 13 | 12 |
| 522 | 426.59 | temperature | 30.0 | 1440 | < th | dose independent | rect. | 13 | 6 |
| 525 | 426.60 | radiation | 20.0 | 1440 | > th | dose independent | rect. | 16 | 1 |
| 550 | 426.72 | precipitation | 0.1 | 90 | < th | dose independent | rect. | 3 | 16 |
| 551 | 426.72 | precipitation | 0.1 | 90 | < th | dose dependent | rect. | 3 | 16 |
| 558 | 426.80 | temperature | 30.0 | 1440 | > th | dose independent | rect. | 14 | 5 |
| 584 | 427.15 | temperature | 30.0 | 270 | < th | dose independent | rect. | 19 | 18 |
| 645 | 427.62 | temperature | 30.0 | 1440 | < th | dose independent | sin | 17 | NA |
| 650 | 427.65 | radiation | 1.0 | 270 | < th | dose independent | rect. | 17 | 8 |
| 654 | 427.68 | temperature | 30.0 | 270 | < th | dose independent | rect. | 6 | 18 |
| 677 | 427.89 | temperature | 30.0 | 270 | < th | dose independent | rect. | 5 | 20 |
| 683 | 427.95 | temperature | 15.0 | 90 | > th | dose independent | rect. | 19 | 8 |
| 684 | 427.99 | precipitation | 0.1 | 90 | < th | dose independent | rect. | 19 | 8 |
| 685 | 427.99 | precipitation | 0.1 | 90 | < th | dose dependent | rect. | 19 | 8 |
| 689 | 428.02 | wind | 9.0 | 270 | < th | dose independent | rect. | 5 | 9 |
| 703 | 428.12 | temperature | 10.0 | 270 | > th | dose dependent | rect. | 11 | 8 |
| 713 | 428.17 | temperature | 30.0 | 1440 | > th | dose independent | sin | 16 | NA |
| 765 | 428.61 | precipitation | 0.1 | 270 | < th | dose independent | rect. | 5 | 9 |
| 766 | 428.61 | precipitation | 0.1 | 270 | < th | dose dependent | rect. | 5 | 9 |
| 808 | 428.79 | temperature | 10.0 | 270 | > th | dose independent | rect. | 5 | 9 |
| 809 | 428.79 | atmosphere | 995.0 | 270 | > th | dose independent | rect. | 5 | 9 |
| 810 | 428.79 | atmosphere | 1015.0 | 270 | < th | dose independent | rect. | 5 | 9 |
| 811 | 428.79 | temperature | 10.0 | 270 | > th | dose independent | rect. | 14 | 15 |
| 813 | 428.82 | radiation | 1.0 | 270 | < th | dose dependent | rect. | 17 | 8 |
| 816 | 428.84 | temperature | 15.0 | 270 | > th | dose dependent | rect. | 14 | 4 |
| 855 | 429.05 | temperature | 30.0 | 1440 | < th | dose independent | rect. | 17 | 23 |
| 859 | 429.10 | temperature | 15.0 | 90 | > th | dose independent | rect. | 3 | 16 |
| 875 | 429.11 | temperature | 10.0 | 270 | > th | dose dependent | rect. | 11 | 22 |
| 888 | 429.20 | temperature | 30.0 | 90 | < th | dose independent | rect. | 19 | 8 |
| 889 | 429.20 | humidity | 50.0 | 90 | > th | dose independent | rect. | 19 | 8 |
| 891 | 429.20 | atmosphere | 995.0 | 90 | > th | dose independent | rect. | 19 | 8 |
| 892 | 429.20 | radiation | 1.0 | 90 | < th | dose independent | rect. | 19 | 8 |
| 899 | 429.20 | atmosphere | 1015.0 | 90 | < th | dose independent | rect. | 3 | 16 |
| 900 | 429.20 | radiation | 10.0 | 90 | < th | dose dependent | rect. | 19 | 8 |
| 929 | 429.30 | temperature | 30.0 | 1440 | < th | dose independent | rect. | 21 | 22 |
| 945 | 429.34 | temperature | 30.0 | 1440 | < th | dose independent | no | NA | NA |
| 949 | 429.34 | temperature | 30.0 | 1440 | < th | dose independent | rect. | 2 | 23 |
| 964 | 429.36 | temperature | 30.0 | 1440 | < th | dose independent | rect. | 24 | 23 |
| 966 | 429.37 | precipitation | 0.1 | 270 | < th | dose independent | rect. | 14 | 15 |
| 974 | 429.37 | precipitation | 0.1 | 270 | < th | dose dependent | rect. | 14 | 15 |