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Notice!
This gene did NOT pass the analysis criteria (log2(expression) > 5 in more than 80% of samples & normality of residuals was not rejected).
The modeling results may be unreliable.

Os03g0749100

blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II

Description : Similar to Beta-glucanase.


log2(Expression) ~ Norm(μ, σ2)

μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8

par. value (S.E.)
α : 2.97 (0.0367) R2 : 0.00103
β1 : -- (--) R2dD : -- R2D : --
β2 : -- (--) R2dC : -- R2C : --
β3 : -- (--) R2dE : -- R2E : --
β4 : -- (--) R2dD*C : -- R2D*C : --
β5 : -- (--) R2dD*E : -- R2D*E : --
γ1 : 0.0529 (0.0772) R2dN8 : 0.00133 R2N8 : 0.00103
σ : 0.69
deviance : 218.74
__
_____
C
peak time of C : --
E
wheather : --
threshold : --
memory length : --
response mode : --
dose dependency : --
G
type of G : --
peak or start time of G : --
open length of G : --

__

Dependence on each variable

Residual plot

Process of the parameter reduction
(fixed parameters. wheather = temperature, response mode = > th, dose dependency = dose dependent, type of G = no)

deviance σ α β1 β2 β3 β4 β5 γ1 peak time of C threshold memory length peak or start time of G open length of G
213.4 0.686 2.93 0.213 0.00645 -0.104 0.635 6.14 0.0946 5.17 29.01 12 -- --
213.89 0.686 2.97 -0.0776 0.00353 0.818 0.536 -- 0.0716 5.74 31.14 14 -- --
213.95 0.686 2.94 0.215 0.0367 -0.171 -- 6.39 0.0887 11.1 29.19 12 -- --
214.53 0.687 2.97 -0.0715 0.028 0.778 -- -- 0.0683 11.3 31.2 13 -- --
214.03 0.685 2.94 0.204 -- -0.134 -- 6.2 0.088 -- 29.19 12 -- --
218.15 0.692 2.97 -0.0399 0.0679 -- -0.354 -- 0.0515 16.9 -- -- -- --
218.31 0.692 2.97 -0.0399 0.0804 -- -- -- 0.0501 14.3 -- -- -- --
214.58 0.685 2.97 -0.0725 -- 0.788 -- -- 0.0683 -- 31.2 13 -- --
214.67 0.686 2.97 -- 0.0292 0.766 -- -- 0.0759 11.6 31.2 13 -- --
218.7 0.691 2.97 -0.0433 -- -- -- -- 0.0481 -- -- -- -- --
218.35 0.691 2.97 -- 0.0811 -- -- -- 0.0545 14.4 -- -- -- --
214.72 0.685 2.97 -- -- 0.777 -- -- 0.076 -- 31.2 13 -- --
218.74 0.69 2.97 -- -- -- -- -- 0.0529 -- -- -- -- --

Results of the grid search

Summarized heatmap of deviance
 Histogram

Local optima within top1000 grid-points

rank deviance wheather threshold memory length response mode dose dependency type of G peak or start time of G open length of G
1 208.65 temperature 20.0 30 < th dose independent rect. 7 11
6 208.79 temperature 20.0 30 < th dose independent rect. 7 9
11 208.89 temperature 20.0 30 < th dose independent rect. 7 7
19 208.98 temperature 20.0 30 < th dose independent rect. 7 5
23 209.00 wind 5.0 10 > th dose independent rect. 8 1
26 209.00 wind 5.0 10 > th dose dependent rect. 8 1
30 209.01 temperature 20.0 10 < th dose dependent rect. 7 5
34 209.02 temperature 20.0 90 < th dose dependent rect. 7 4
37 209.04 temperature 20.0 10 < th dose independent rect. 6 3
40 209.06 temperature 20.0 30 < th dose independent rect. 7 1
44 209.06 temperature 20.0 30 < th dose dependent rect. 7 1
88 209.23 humidity 50.0 30 > th dose independent rect. 16 1
98 209.34 temperature 30.0 30 < th dose independent rect. 16 1
135 209.70 temperature 30.0 90 > th dose dependent rect. 10 1
144 209.78 wind 5.0 10 > th dose independent rect. 16 1
152 209.85 humidity 50.0 30 > th dose dependent rect. 16 1
155 209.87 atmosphere 1005.0 30 > th dose independent rect. 16 1
157 209.87 atmosphere 1005.0 30 > th dose dependent rect. 16 1
165 210.04 temperature 30.0 270 > th dose independent rect. 10 1
167 210.09 wind 5.0 30 > th dose dependent rect. 16 1
172 210.43 temperature 30.0 90 > th dose dependent rect. 16 21
173 210.45 temperature 30.0 270 > th dose independent rect. 17 18
185 211.04 wind 3.0 90 > th dose dependent rect. 6 1
186 211.06 radiation 1.0 10 > th dose independent rect. 16 1
187 211.06 radiation 10.0 10 < th dose independent rect. 16 1
189 211.14 temperature 25.0 10 > th dose independent rect. 16 1
191 211.24 temperature 30.0 90 > th dose dependent rect. 17 18
192 211.26 humidity 80.0 10 < th dose independent rect. 16 1
204 211.51 wind 5.0 10 > th dose independent rect. 11 1
205 211.51 humidity 50.0 30 < th dose independent rect. 11 5
224 211.53 radiation 20.0 10 < th dose dependent rect. 16 1
240 211.56 humidity 50.0 30 < th dose independent rect. 13 3
243 211.59 humidity 50.0 30 < th dose dependent rect. 13 3
246 211.60 radiation 40.0 10 < th dose dependent rect. 16 1
267 211.61 temperature 30.0 30 < th dose dependent rect. 16 1
268 211.63 wind 1.0 10 > th dose independent rect. 16 1
269 211.63 wind 9.0 10 < th dose independent rect. 16 1
270 211.63 temperature 10.0 10 > th dose independent rect. 16 1
272 211.63 atmosphere 1010.0 10 < th dose independent rect. 16 1
274 211.63 radiation 40.0 10 < th dose independent rect. 16 1
275 211.63 precipitation 0.1 10 < th dose independent rect. 16 1
276 211.63 temperature 10.0 10 > th dose independent rect. 17 23
277 211.63 precipitation 0.1 10 < th dose dependent rect. 16 1
300 211.68 atmosphere 995.0 10 > th dose independent rect. 16 1
302 211.71 temperature 30.0 270 < th dose independent sin 10 NA
324 211.77 temperature 30.0 90 > th dose dependent rect. 10 3
349 211.94 temperature 30.0 270 > th dose independent sin 10 NA
351 211.94 atmosphere 1015.0 10 < th dose dependent rect. 16 1
353 211.95 temperature 10.0 10 > th dose dependent rect. 16 1
372 211.99 wind 3.0 90 > th dose independent rect. 6 1
373 212.00 temperature 30.0 10 > th dose independent rect. 11 7
378 212.04 wind 5.0 10 > th dose dependent rect. 12 1
382 212.05 temperature 30.0 90 > th dose dependent sin 9 NA
383 212.05 humidity 80.0 90 < th dose dependent rect. 6 1
398 212.13 temperature 15.0 720 > th dose dependent rect. 9 3
408 212.20 radiation 1.0 10 > th dose dependent rect. 16 1
461 212.36 wind 5.0 10 > th dose independent rect. 7 6
467 212.40 temperature 20.0 720 > th dose dependent rect. 11 1
473 212.45 temperature 30.0 10 > th dose dependent rect. 12 1
483 212.53 humidity 50.0 10 < th dose independent sin 6 NA
512 212.56 humidity 90.0 10 < th dose dependent rect. 16 1
518 212.59 wind 9.0 10 < th dose dependent rect. 16 1
526 212.64 temperature 30.0 10 > th dose independent rect. 11 2
547 212.71 temperature 20.0 30 > th dose dependent rect. 15 12
548 212.72 humidity 80.0 90 < th dose independent rect. 6 1
557 212.75 temperature 30.0 10 > th dose dependent rect. 15 1
558 212.76 temperature 20.0 90 > th dose dependent rect. 10 18
559 212.77 radiation 10.0 10 < th dose independent rect. 8 1
570 212.83 humidity 50.0 30 > th dose independent rect. 17 23
572 212.84 temperature 25.0 1440 > th dose independent rect. 8 1
573 212.84 temperature 30.0 14400 < th dose independent rect. 22 11
577 212.86 temperature 25.0 1440 < th dose independent rect. 8 1
579 212.87 temperature 30.0 14400 < th dose independent rect. 24 9
604 212.89 temperature 30.0 14400 < th dose independent rect. 5 4
605 212.90 temperature 30.0 14400 > th dose independent rect. 8 1
632 212.90 temperature 30.0 14400 > th dose dependent rect. 8 1
648 212.91 temperature 30.0 14400 < th dose independent rect. 7 2
662 212.91 temperature 30.0 14400 < th dose independent rect. 19 14
667 212.92 humidity 50.0 30 > th dose independent rect. 12 13
715 213.01 temperature 25.0 1440 > th dose independent rect. 7 3
727 213.01 temperature 15.0 30 > th dose dependent rect. 11 12
738 213.03 wind 5.0 10 > th dose independent rect. 21 17
780 213.10 atmosphere 1000.0 10 < th dose independent rect. 11 3
815 213.12 temperature 25.0 1440 > th dose independent rect. 5 5
865 213.18 temperature 25.0 1440 < th dose independent rect. 5 5
871 213.20 temperature 25.0 1440 > th dose independent rect. 1 9
879 213.22 temperature 30.0 10 < th dose independent rect. 5 23
917 213.31 temperature 25.0 43200 < th dose independent rect. 20 1
922 213.32 temperature 25.0 43200 > th dose independent rect. 20 1
926 213.32 wind 3.0 10 > th dose dependent rect. 7 7
933 213.33 temperature 25.0 1440 < th dose independent rect. 1 10
951 213.35 wind 5.0 10 > th dose independent sin 4 NA
971 213.39 humidity 90.0 270 > th dose independent rect. 24 1
997 213.44 temperature 25.0 4320 < th dose independent rect. 18 3