Os03g0748800
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : DEAD/DEAH box helicase domain containing protein.
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Os03g0748800 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : DEAD/DEAH box helicase domain containing protein.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = temperature,
response mode = > th, dose dependency = dose dependent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 29.53 | 0.255 | 9.84 | 0.433 | 0.459 | -0.629 | 0.199 | 1.12 | 0.17 | 16 | 24.59 | 1114 | -- | -- |
| 29.96 | 0.255 | 9.87 | 0.176 | 0.465 | -0.539 | 0.133 | -- | 0.107 | 16 | 24.29 | 1091 | -- | -- |
| 29.64 | 0.254 | 9.84 | 0.417 | 0.458 | -0.625 | -- | 1.03 | 0.168 | 16 | 24.54 | 1113 | -- | -- |
| 30.01 | 0.255 | 9.87 | 0.169 | 0.462 | -0.53 | -- | -- | 0.107 | 16 | 24.23 | 1099 | -- | -- |
| 40.67 | 0.297 | 9.85 | 0.444 | -- | -0.69 | -- | 0.994 | 0.161 | -- | 24.46 | 1172 | -- | -- |
| 38.19 | 0.29 | 9.89 | 0.0117 | 0.532 | -- | 0.231 | -- | 0.0366 | 15.2 | -- | -- | -- | -- |
| 38.36 | 0.29 | 9.88 | 0.0163 | 0.533 | -- | -- | -- | 0.038 | 15.2 | -- | -- | -- | -- |
| 41.02 | 0.298 | 9.86 | 0.198 | -- | -0.639 | -- | -- | 0.122 | -- | 23.99 | 1151 | -- | -- |
| 30.72 | 0.258 | 9.88 | -- | 0.465 | -0.491 | -- | -- | 0.0821 | 15.9 | 24.46 | 1095 | -- | -- |
| 54.47 | 0.345 | 9.89 | -0.00634 | -- | -- | -- | -- | 0.024 | -- | -- | -- | -- | -- |
| 38.37 | 0.29 | 9.88 | -- | 0.533 | -- | -- | -- | 0.0362 | 15.2 | -- | -- | -- | -- |
| 41.89 | 0.301 | 9.87 | -- | -- | -0.589 | -- | -- | 0.0917 | -- | 24.1 | 1153 | -- | -- |
| 54.47 | 0.344 | 9.89 | -- | -- | -- | -- | -- | 0.0247 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 25.26 | temperature | 20 | 10 | > th | dose dependent | rect. | 15 | 17 |
| 2 | 25.30 | temperature | 20 | 90 | > th | dose dependent | rect. | 15 | 17 |
| 6 | 25.80 | temperature | 20 | 270 | > th | dose dependent | rect. | 13 | 18 |
| 79 | 27.31 | temperature | 20 | 10 | > th | dose dependent | sin | 12 | NA |
| 121 | 27.94 | temperature | 10 | 10 | > th | dose dependent | sin | 13 | NA |
| 162 | 28.24 | temperature | 30 | 270 | < th | dose dependent | rect. | 16 | 10 |
| 179 | 28.34 | temperature | 30 | 10 | < th | dose dependent | sin | 13 | NA |
| 183 | 28.35 | temperature | 25 | 720 | > th | dose independent | rect. | 13 | 13 |
| 187 | 28.37 | temperature | 20 | 720 | > th | dose dependent | rect. | 15 | 9 |
| 194 | 28.39 | temperature | 25 | 720 | < th | dose independent | sin | 16 | NA |
| 195 | 28.39 | temperature | 25 | 720 | < th | dose independent | rect. | 13 | 13 |
| 205 | 28.44 | temperature | 10 | 720 | > th | dose dependent | rect. | 15 | 9 |
| 248 | 28.56 | temperature | 25 | 720 | > th | dose independent | sin | 16 | NA |
| 285 | 28.66 | temperature | 25 | 720 | > th | dose independent | rect. | 13 | 18 |
| 414 | 28.98 | temperature | 25 | 720 | < th | dose independent | rect. | 15 | 8 |
| 419 | 28.99 | temperature | 20 | 90 | > th | dose dependent | rect. | 23 | 9 |
| 466 | 29.11 | temperature | 20 | 10 | > th | dose dependent | rect. | 24 | 8 |
| 481 | 29.13 | temperature | 30 | 10 | < th | dose dependent | rect. | 18 | 10 |
| 569 | 29.31 | temperature | 30 | 720 | < th | dose dependent | rect. | 16 | 5 |
| 648 | 29.46 | temperature | 30 | 720 | < th | dose dependent | rect. | 17 | 2 |
| 649 | 29.46 | temperature | 30 | 10 | < th | dose dependent | rect. | 16 | 12 |
| 735 | 29.62 | temperature | 30 | 10 | < th | dose dependent | rect. | 14 | 14 |
| 742 | 29.63 | radiation | 1 | 270 | < th | dose dependent | rect. | 5 | 21 |
| 890 | 29.87 | temperature | 20 | 10 | > th | dose dependent | rect. | 2 | 6 |
| 894 | 29.88 | radiation | 1 | 270 | < th | dose independent | rect. | 5 | 21 |