FiT-DB / Search/ Help/ Sample detail
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Os03g0748400 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Similar to Serine/threonine-protein kinase SPRK1 (EC 2.7.1.37) (Serine/arginine- rich protein specific kinase 1) (SR-protein-specific kinase 1) (SFRS protein kinase 1).
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = temperature,
response mode = > th, dose dependency = dose dependent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 35.95 | 0.282 | 9.07 | -0.182 | 0.432 | 1.15 | -0.556 | -0.436 | -0.124 | 7.68 | 17.2 | 95 | -- | -- |
| 36.11 | 0.28 | 9.07 | -0.109 | 0.438 | 1.16 | -0.564 | -- | -0.104 | 7.78 | 16.8 | 97 | -- | -- |
| 36.82 | 0.283 | 9.07 | -0.199 | 0.434 | 1.15 | -- | -0.448 | -0.127 | 7.7 | 17.35 | 95 | -- | -- |
| 37 | 0.283 | 9.06 | -0.126 | 0.438 | 1.16 | -- | -- | -0.104 | 7.74 | 16.9 | 99 | -- | -- |
| 44.19 | 0.311 | 9.08 | -0.168 | -- | 1.1 | -- | -0.477 | -0.111 | -- | 17.35 | 95 | -- | -- |
| 53.3 | 0.342 | 9.02 | 0.145 | 0.457 | -- | -0.321 | -- | 0.0795 | 10.9 | -- | -- | -- | -- |
| 53.71 | 0.343 | 9.02 | 0.133 | 0.458 | -- | -- | -- | 0.079 | 11.1 | -- | -- | -- | -- |
| 44.38 | 0.31 | 9.07 | -0.104 | -- | 1.25 | -- | -- | -0.0916 | -- | -20.55 | 2 | -- | -- |
| 37.38 | 0.285 | 9.06 | -- | 0.432 | 1.09 | -- | -- | -0.0845 | 7.86 | 17.22 | 99 | -- | -- |
| 66.8 | 0.382 | 9.04 | 0.122 | -- | -- | -- | -- | 0.0754 | -- | -- | -- | -- | -- |
| 54.18 | 0.344 | 9.03 | -- | 0.457 | -- | -- | -- | 0.0642 | 11 | -- | -- | -- | -- |
| 44.64 | 0.312 | 9.07 | -- | -- | 1.07 | -- | -- | -0.0761 | -- | 17.22 | 99 | -- | -- |
| 67.2 | 0.383 | 9.04 | -- | -- | -- | -- | -- | 0.0618 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 36.15 | temperature | 15 | 90 | > th | dose dependent | no | NA | NA |
| 5 | 36.31 | temperature | 15 | 270 | > th | dose dependent | rect. | 6 | 23 |
| 6 | 36.33 | temperature | 15 | 270 | > th | dose dependent | rect. | 3 | 23 |
| 7 | 36.37 | temperature | 15 | 270 | > th | dose dependent | rect. | 12 | 23 |
| 9 | 36.49 | temperature | 15 | 90 | > th | dose dependent | rect. | 23 | 23 |
| 10 | 36.63 | temperature | 15 | 270 | > th | dose dependent | rect. | 18 | 23 |
| 17 | 36.81 | temperature | 15 | 270 | > th | dose dependent | rect. | 10 | 23 |
| 19 | 36.82 | temperature | 30 | 90 | < th | dose dependent | rect. | 15 | 23 |
| 29 | 36.93 | temperature | 30 | 90 | < th | dose dependent | no | NA | NA |
| 30 | 36.94 | temperature | 30 | 90 | < th | dose dependent | rect. | 13 | 23 |
| 35 | 37.00 | temperature | 30 | 30 | < th | dose dependent | rect. | 17 | 23 |
| 38 | 37.05 | temperature | 30 | 270 | < th | dose dependent | rect. | 8 | 23 |
| 45 | 37.10 | temperature | 15 | 270 | > th | dose dependent | rect. | 21 | 23 |
| 48 | 37.12 | temperature | 15 | 270 | > th | dose dependent | rect. | 1 | 23 |
| 55 | 37.15 | temperature | 30 | 270 | < th | dose dependent | rect. | 20 | 23 |
| 68 | 37.28 | temperature | 30 | 30 | < th | dose dependent | rect. | 11 | 23 |
| 72 | 37.31 | temperature | 30 | 270 | < th | dose dependent | rect. | 5 | 23 |
| 90 | 37.44 | temperature | 30 | 30 | < th | dose dependent | rect. | 9 | 23 |
| 155 | 37.89 | temperature | 15 | 1440 | > th | dose dependent | rect. | 23 | 2 |
| 167 | 37.95 | temperature | 30 | 1440 | < th | dose dependent | rect. | 23 | 2 |
| 175 | 38.00 | temperature | 15 | 1440 | > th | dose dependent | rect. | 23 | 10 |
| 181 | 38.02 | temperature | 15 | 1440 | > th | dose dependent | rect. | 23 | 5 |
| 183 | 38.02 | temperature | 15 | 720 | > th | dose dependent | rect. | 20 | 20 |
| 184 | 38.02 | temperature | 30 | 90 | < th | dose dependent | rect. | 1 | 23 |
| 196 | 38.05 | temperature | 30 | 1440 | < th | dose dependent | rect. | 23 | 10 |
| 208 | 38.08 | temperature | 30 | 1440 | < th | dose dependent | rect. | 23 | 5 |
| 351 | 38.22 | temperature | 30 | 30 | < th | dose dependent | rect. | 3 | 23 |
| 397 | 38.27 | temperature | 15 | 1440 | > th | dose dependent | sin | 9 | NA |
| 437 | 38.32 | temperature | 30 | 1440 | < th | dose dependent | sin | 10 | NA |
| 459 | 38.34 | temperature | 30 | 10 | < th | dose dependent | rect. | 17 | 19 |
| 498 | 38.38 | temperature | 15 | 1440 | > th | dose dependent | rect. | 3 | 1 |
| 500 | 38.38 | temperature | 30 | 1440 | < th | dose dependent | rect. | 3 | 1 |
| 509 | 38.39 | temperature | 30 | 4320 | < th | dose dependent | rect. | 21 | 1 |
| 522 | 38.40 | temperature | 10 | 4320 | > th | dose dependent | rect. | 20 | 2 |
| 734 | 38.62 | temperature | 20 | 4320 | > th | dose independent | rect. | 20 | 3 |
| 942 | 38.80 | temperature | 20 | 4320 | < th | dose independent | rect. | 20 | 3 |
| 943 | 38.80 | temperature | 20 | 1440 | > th | dose independent | rect. | 20 | 8 |
