Os03g0747500
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Seed maturation protein domain containing protein.
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Os03g0747500 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Seed maturation protein domain containing protein.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = humidity,
response mode = < th, dose dependency = dose dependent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 39.37 | 0.295 | 3.28 | 0.213 | 0.14 | 0.245 | 0.139 | 1.21 | -0.0891 | 8.43 | 91.02 | 5892 | -- | -- |
| 41.47 | 0.3 | 3.28 | 0.136 | 0.141 | 0.282 | 0.133 | -- | -0.12 | 8.15 | 92.04 | 5838 | -- | -- |
| 39.42 | 0.292 | 3.28 | 0.216 | 0.14 | 0.245 | -- | 1.21 | -0.0896 | 8.15 | 91 | 5895 | -- | -- |
| 41.38 | 0.3 | 3.28 | 0.131 | 0.17 | 0.298 | -- | -- | -0.124 | 7.67 | 92 | 4801 | -- | -- |
| 40.51 | 0.296 | 3.29 | 0.218 | -- | 0.247 | -- | 1.19 | -0.0868 | -- | 91 | 5857 | -- | -- |
| 42.47 | 0.306 | 3.27 | 0.112 | 0.138 | -- | 0.13 | -- | -0.0577 | 8.37 | -- | -- | -- | -- |
| 42.52 | 0.305 | 3.27 | 0.116 | 0.139 | -- | -- | -- | -0.058 | 8.08 | -- | -- | -- | -- |
| 42.55 | 0.304 | 3.28 | 0.135 | -- | 0.278 | -- | -- | -0.111 | -- | 89.12 | 5811 | -- | -- |
| 41.82 | 0.301 | 3.28 | -- | 0.169 | 0.288 | -- | -- | -0.128 | 7.63 | 88.36 | 4801 | -- | -- |
| 43.57 | 0.308 | 3.27 | 0.117 | -- | -- | -- | -- | -0.0563 | -- | -- | -- | -- | -- |
| 42.87 | 0.306 | 3.27 | -- | 0.14 | -- | -- | -- | -0.0709 | 8.02 | -- | -- | -- | -- |
| 43.01 | 0.305 | 3.29 | -- | -- | 0.26 | -- | -- | -0.121 | -- | 88 | 5783 | -- | -- |
| 43.94 | 0.309 | 3.27 | -- | -- | -- | -- | -- | -0.0693 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 38.80 | humidity | 80 | 14400 | < th | dose dependent | rect. | 4 | 5 |
| 6 | 38.96 | wind | 1 | 14400 | < th | dose dependent | rect. | 6 | 1 |
| 9 | 39.08 | humidity | 70 | 14400 | > th | dose independent | rect. | 8 | 1 |
| 10 | 39.15 | humidity | 70 | 14400 | > th | dose independent | rect. | 4 | 5 |
| 12 | 39.15 | humidity | 70 | 14400 | > th | dose independent | rect. | 1 | 8 |
| 18 | 39.16 | humidity | 70 | 14400 | > th | dose independent | rect. | 6 | 3 |
| 22 | 39.17 | humidity | 70 | 14400 | < th | dose independent | rect. | 8 | 1 |
| 24 | 39.24 | humidity | 50 | 4320 | > th | dose dependent | rect. | 2 | 10 |
| 35 | 39.28 | humidity | 70 | 1440 | < th | dose independent | rect. | 10 | 1 |
| 39 | 39.29 | humidity | 70 | 14400 | < th | dose independent | rect. | 6 | 3 |
| 46 | 39.29 | humidity | 80 | 4320 | < th | dose independent | rect. | 3 | 10 |
| 50 | 39.29 | humidity | 70 | 4320 | > th | dose dependent | rect. | 3 | 9 |
| 62 | 39.31 | humidity | 90 | 4320 | < th | dose dependent | rect. | 23 | 14 |
| 65 | 39.32 | humidity | 80 | 4320 | > th | dose independent | rect. | 4 | 9 |
| 73 | 39.33 | humidity | 50 | 4320 | > th | dose dependent | sin | 5 | NA |
| 82 | 39.35 | humidity | 50 | 4320 | > th | dose dependent | rect. | 11 | 1 |
| 83 | 39.35 | humidity | 90 | 4320 | < th | dose dependent | rect. | 3 | 9 |
| 121 | 39.38 | humidity | 90 | 4320 | < th | dose dependent | sin | 5 | NA |
| 123 | 39.38 | humidity | 90 | 4320 | < th | dose dependent | rect. | 11 | 1 |
| 212 | 39.46 | wind | 1 | 14400 | < th | dose independent | rect. | 6 | 1 |
| 241 | 39.48 | humidity | 70 | 4320 | > th | dose independent | sin | 5 | NA |
| 279 | 39.49 | humidity | 70 | 1440 | > th | dose independent | rect. | 10 | 1 |
| 299 | 39.50 | atmosphere | 1005 | 10 | > th | dose dependent | rect. | 2 | 2 |
| 335 | 39.52 | humidity | 80 | 4320 | < th | dose independent | sin | 4 | NA |
| 351 | 39.52 | humidity | 70 | 4320 | > th | dose dependent | rect. | 7 | 6 |
| 636 | 39.61 | wind | 5 | 14400 | < th | dose independent | rect. | 11 | 1 |
| 676 | 39.62 | wind | 7 | 14400 | < th | dose independent | rect. | 9 | 1 |
| 684 | 39.62 | humidity | 80 | 4320 | > th | dose dependent | rect. | 7 | 2 |
| 785 | 39.65 | wind | 1 | 14400 | < th | dose dependent | rect. | 4 | 7 |
| 892 | 39.69 | wind | 1 | 14400 | < th | dose dependent | rect. | 4 | 4 |
| 967 | 39.71 | humidity | 50 | 4320 | > th | dose dependent | rect. | 7 | 1 |
| 996 | 39.72 | atmosphere | 995 | 10 | > th | dose independent | rect. | 3 | 23 |