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Os03g0746900

blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II

Description : Protein of unknown function DUF1677, plant family protein.


log2(Expression) ~ Norm(μ, σ2)

μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8

par. value (S.E.)
α : 9.35 (0.0615) R2 : 0.609
β1 : 0.445 (0.223) R2dD : 0.00394 R2D : -0.00236
β2 : 2.24 (0.141) R2dC : 0.213 R2C : 0.217
β3 : -1.1 (0.195) R2dE : 0.0305 R2E : 0.0578
β4 : -- (--) R2dD*C : -- R2D*C : --
β5 : 10.3 (0.757) R2dD*E : 0.172 R2D*E : 0.225
γ1 : 1.33 (0.136) R2dN8 : 0.119 R2N8 : 0.16
σ : 1.11
deviance : 564.96
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C
peak time of C : 0.595
E
wheather : radiation
threshold : 11.58
memory length : 4330
response mode : > th
dose dependency : dose dependent
G
type of G : rect.
peak or start time of G : 6.97
open length of G : 1

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Dependence on each variable

Residual plot

Process of the parameter reduction
(fixed parameters. wheather = radiation, response mode = > th, dose dependency = dose dependent, type of G = rect.)

deviance σ α β1 β2 β3 β4 β5 γ1 peak time of C threshold memory length peak or start time of G open length of G
565.49 1.12 9.33 0.523 2.21 -1.09 -0.272 10.3 1.34 0.605 10.85 4325 6.99 1
685.83 1.22 9.23 0.412 2.4 -1.78 -0.114 -- 1.56 0.498 34.37 3990 7.28 1
564.96 1.11 9.35 0.445 2.24 -1.1 -- 10.3 1.33 0.595 11.58 4330 6.97 1
665.24 1.2 9.23 -0.107 2.6 -2.18 -- -- 1.62 0.284 33.62 4338 7.26 1.02
820.29 1.33 9.3 0.866 -- -1.87 -- 10.7 1.78 -- 10.98 4798 6.97 1.11
834.84 1.35 9.11 1.07 2.25 -- -0.203 -- 1.88 0.606 -- -- -- --
835.02 1.35 9.11 1.07 2.25 -- -- -- 1.88 0.608 -- -- -- --
940.14 1.43 9.22 0.255 -- -2.64 -- -- 1.53 -- 35.89 4911 7.25 0.929
652.51 1.19 9.17 -- 2.44 -2.48 -- -- 1.56 0.524 35.06 4329 7.2 1.07
1151.75 1.59 9.07 1.15 -- -- -- -- 1.92 -- -- -- -- --
865.47 1.38 9.14 -- 2.26 -- -- -- 1.76 0.631 -- -- -- --
903.27 1.4 9.21 -- -- -3.74 -- -- 1.38 -- 34.32 4905 7.36 0.938
1186.88 1.61 9.1 -- -- -- -- -- 1.79 -- -- -- -- --

Results of the grid search

Summarized heatmap of deviance
 Histogram

Local optima within top1000 grid-points

rank deviance wheather threshold memory length response mode dose dependency type of G peak or start time of G open length of G
1 530.69 wind 7 43200 > th dose dependent rect. 14 19
4 531.38 wind 7 43200 > th dose independent rect. 14 20
5 531.82 wind 7 43200 < th dose independent rect. 14 20
7 531.96 wind 7 43200 > th dose independent sin 13 NA
12 532.51 wind 7 43200 < th dose independent sin 13 NA
15 532.70 wind 7 43200 > th dose independent rect. 16 16
16 532.70 wind 9 43200 < th dose independent rect. 14 18
21 533.16 wind 7 43200 > th dose dependent sin 13 NA
23 533.25 radiation 10 43200 < th dose independent rect. 17 14
33 533.94 wind 7 43200 < th dose independent rect. 16 15
36 534.02 radiation 10 43200 < th dose independent rect. 21 10
43 534.20 wind 9 43200 > th dose independent rect. 18 7
45 534.22 wind 7 43200 > th dose dependent rect. 16 15
46 534.24 radiation 10 43200 < th dose independent rect. 4 3
53 534.51 radiation 40 43200 < th dose independent rect. 21 12
58 534.73 radiation 40 43200 < th dose independent rect. 7 2
63 534.81 radiation 40 43200 < th dose independent rect. 16 17
67 534.91 radiation 40 43200 < th dose independent rect. 5 4
72 535.09 wind 7 43200 > th dose independent rect. 16 23
84 535.43 wind 9 43200 < th dose independent rect. 18 7
100 535.81 wind 7 43200 > th dose dependent rect. 9 23
102 535.86 wind 7 43200 < th dose independent rect. 16 23
111 536.18 wind 7 43200 > th dose dependent rect. 8 17
126 536.57 wind 7 43200 > th dose dependent rect. 5 18
132 536.66 wind 7 43200 > th dose independent rect. 18 23
139 536.76 wind 7 43200 > th dose independent rect. 22 23
147 536.93 wind 7 43200 < th dose independent rect. 18 23
151 536.96 wind 7 43200 > th dose independent no NA NA
152 536.98 wind 7 43200 < th dose independent rect. 22 23
154 537.02 wind 7 43200 > th dose independent rect. 20 23
162 537.11 wind 9 43200 > th dose dependent rect. 18 7
164 537.12 wind 7 43200 > th dose independent rect. 2 23
165 537.13 wind 7 43200 > th dose independent rect. 4 23
166 537.13 wind 7 43200 < th dose independent rect. 20 23
169 537.15 wind 7 43200 < th dose independent no NA NA
176 537.26 wind 7 43200 < th dose independent rect. 4 23
179 537.29 wind 7 43200 > th dose independent rect. 17 10
180 537.30 wind 7 43200 < th dose independent rect. 2 23
196 537.49 wind 7 43200 > th dose independent rect. 6 23
197 537.49 wind 7 43200 < th dose independent rect. 9 23
206 537.58 wind 7 43200 < th dose independent rect. 17 10
208 537.60 wind 7 43200 > th dose independent rect. 9 23
216 537.64 wind 7 43200 > th dose dependent rect. 24 23
269 538.17 wind 7 43200 > th dose dependent rect. 22 23
275 538.20 wind 7 43200 > th dose dependent no NA NA
298 538.39 radiation 10 43200 < th dose independent rect. 17 1
330 538.77 wind 7 43200 > th dose dependent rect. 20 23
386 539.50 wind 7 43200 > th dose dependent rect. 16 23
468 540.35 wind 7 43200 > th dose dependent rect. 18 23
491 540.51 wind 7 43200 > th dose dependent sin 23 NA
531 540.86 radiation 10 43200 < th dose independent rect. 17 9
797 543.62 wind 7 43200 > th dose dependent rect. 18 2