Os03g0746700
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Conserved hypothetical protein.
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Os03g0746700 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Conserved hypothetical protein.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = radiation,
response mode = < th, dose dependency = dose dependent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 151.83 | 0.579 | 12.2 | -0.378 | 1.15 | -1.02 | 1.46 | 3.71 | 0.506 | 23.7 | 1.83 | 1429 | -- | -- |
| 154.26 | 0.578 | 12.1 | -0.00687 | 1.96 | -2.24 | 1.64 | -- | 0.577 | 0.592 | 0.4199 | 1678 | -- | -- |
| 148.62 | 0.568 | 12.2 | -0.485 | 1.47 | -1.04 | -- | 5.87 | 0.481 | 23.8 | 2.299 | 1582 | -- | -- |
| 164.45 | 0.597 | 12.2 | -0.0963 | 1.99 | -2.44 | -- | -- | 0.569 | 0.523 | 0.4779 | 1667 | -- | -- |
| 212.01 | 0.682 | 12.1 | 0.403 | -- | 0.772 | -- | 1.07 | 0.819 | -- | 2.299 | 1582 | -- | -- |
| 192.07 | 0.65 | 12.1 | 0.427 | 1.15 | -- | 1.53 | -- | 0.798 | 23.8 | -- | -- | -- | -- |
| 202.01 | 0.666 | 12.1 | 0.368 | 1.15 | -- | -- | -- | 0.793 | 23.5 | -- | -- | -- | -- |
| 190.87 | 0.646 | 12.1 | 0.386 | -- | 1.04 | -- | -- | 0.792 | -- | 17.58 | 121 | -- | -- |
| 164.58 | 0.597 | 12.2 | -- | 1.97 | -2.37 | -- | -- | 0.568 | 0.494 | 0.4898 | 1667 | -- | -- |
| 284.49 | 0.788 | 12.1 | 0.399 | -- | -- | -- | -- | 0.805 | -- | -- | -- | -- | -- |
| 205.58 | 0.671 | 12.1 | -- | 1.15 | -- | -- | -- | 0.752 | 23.5 | -- | -- | -- | -- |
| 193.88 | 0.649 | 12.1 | -- | -- | 1.33 | -- | -- | 0.809 | -- | 39.36 | 24 | -- | -- |
| 288.69 | 0.793 | 12.1 | -- | -- | -- | -- | -- | 0.761 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 147.27 | radiation | 1 | 1440 | < th | dose independent | rect. | 10 | 19 |
| 7 | 147.33 | radiation | 1 | 1440 | < th | dose independent | rect. | 10 | 9 |
| 9 | 147.35 | radiation | 1 | 1440 | > th | dose independent | rect. | 9 | 10 |
| 56 | 147.44 | radiation | 1 | 1440 | < th | dose independent | rect. | 12 | 17 |
| 70 | 147.51 | radiation | 1 | 1440 | < th | dose independent | rect. | 12 | 7 |
| 81 | 147.57 | radiation | 1 | 1440 | > th | dose independent | rect. | 13 | 6 |
| 128 | 147.66 | radiation | 1 | 1440 | > th | dose independent | sin | 19 | NA |
| 132 | 147.70 | radiation | 1 | 1440 | < th | dose independent | sin | 19 | NA |
| 146 | 148.08 | radiation | 1 | 1440 | < th | dose dependent | rect. | 9 | 19 |
| 149 | 148.13 | radiation | 1 | 1440 | < th | dose dependent | rect. | 9 | 10 |
| 163 | 148.21 | radiation | 1 | 1440 | < th | dose dependent | rect. | 9 | 13 |
| 234 | 148.68 | radiation | 1 | 1440 | < th | dose dependent | sin | 19 | NA |
| 312 | 150.33 | radiation | 1 | 1440 | < th | dose dependent | rect. | 14 | 2 |
| 313 | 150.34 | radiation | 1 | 1440 | < th | dose independent | rect. | 14 | 2 |
| 314 | 150.37 | radiation | 1 | 1440 | > th | dose independent | rect. | 14 | 2 |
| 380 | 151.76 | wind | 7 | 14400 | > th | dose independent | rect. | 15 | 1 |
| 435 | 152.03 | radiation | 1 | 1440 | < th | dose independent | rect. | 18 | 23 |
| 441 | 152.09 | radiation | 1 | 1440 | > th | dose independent | rect. | 18 | 23 |
| 450 | 152.20 | radiation | 1 | 1440 | < th | dose dependent | rect. | 18 | 23 |
| 493 | 152.50 | radiation | 1 | 1440 | < th | dose independent | rect. | 23 | 20 |
| 494 | 152.51 | wind | 7 | 14400 | < th | dose independent | rect. | 15 | 1 |
| 497 | 152.52 | radiation | 1 | 1440 | < th | dose independent | rect. | 1 | 18 |
| 514 | 152.57 | radiation | 1 | 1440 | < th | dose independent | no | NA | NA |
| 516 | 152.57 | radiation | 1 | 1440 | < th | dose independent | rect. | 2 | 22 |
| 531 | 152.59 | wind | 5 | 14400 | > th | dose dependent | rect. | 15 | 1 |
| 544 | 152.64 | radiation | 1 | 1440 | > th | dose independent | no | NA | NA |
| 627 | 153.01 | radiation | 1 | 1440 | < th | dose dependent | rect. | 23 | 20 |
| 631 | 153.03 | wind | 7 | 43200 | > th | dose independent | rect. | 17 | 2 |
| 632 | 153.03 | radiation | 1 | 1440 | < th | dose dependent | rect. | 2 | 17 |
| 644 | 153.06 | radiation | 1 | 1440 | < th | dose dependent | no | NA | NA |
| 648 | 153.06 | radiation | 1 | 1440 | < th | dose dependent | rect. | 1 | 23 |
| 690 | 153.29 | humidity | 80 | 1440 | < th | dose independent | rect. | 7 | 12 |
| 702 | 153.51 | wind | 7 | 43200 | < th | dose independent | rect. | 16 | 3 |
| 710 | 153.73 | humidity | 90 | 270 | > th | dose dependent | rect. | 7 | 18 |
| 714 | 153.92 | humidity | 80 | 1440 | < th | dose independent | sin | 1 | NA |
| 722 | 154.04 | humidity | 90 | 270 | > th | dose dependent | rect. | 6 | 20 |
| 725 | 154.06 | humidity | 80 | 1440 | < th | dose independent | rect. | 7 | 8 |
| 726 | 154.06 | humidity | 80 | 1440 | > th | dose independent | rect. | 7 | 12 |
| 761 | 154.35 | humidity | 90 | 720 | > th | dose dependent | rect. | 20 | 3 |
| 774 | 154.50 | humidity | 80 | 1440 | > th | dose independent | rect. | 7 | 9 |
| 777 | 154.56 | humidity | 80 | 1440 | < th | dose independent | rect. | 23 | 20 |
| 792 | 154.65 | humidity | 80 | 1440 | > th | dose independent | sin | 0 | NA |
| 798 | 154.71 | wind | 7 | 43200 | > th | dose dependent | rect. | 17 | 2 |
| 837 | 154.95 | wind | 5 | 14400 | > th | dose independent | rect. | 11 | 6 |
| 869 | 155.09 | humidity | 80 | 1440 | < th | dose independent | rect. | 22 | 17 |
| 898 | 155.26 | wind | 7 | 43200 | > th | dose dependent | rect. | 16 | 4 |
| 906 | 155.30 | humidity | 80 | 1440 | < th | dose independent | rect. | 3 | 13 |
| 946 | 155.59 | wind | 5 | 14400 | < th | dose independent | rect. | 11 | 6 |
| 997 | 155.85 | humidity | 80 | 1440 | > th | dose independent | rect. | 23 | 20 |