Os03g0746400
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Protein prenyltransferase domain containing protein.
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Os03g0746400 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Protein prenyltransferase domain containing protein.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = temperature,
response mode = < th, dose dependency = dose dependent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 32.58 | 0.268 | 10.1 | 1.07 | 0.61 | 0.3 | 0.0651 | -1.19 | -0.0238 | 19 | 23.99 | 11 | -- | -- |
| 33.84 | 0.271 | 10.2 | 0.955 | 0.61 | 0.735 | 0.0711 | -- | -0.0636 | 19.1 | 20.66 | 56 | -- | -- |
| 32.58 | 0.266 | 10.2 | 1.06 | 0.609 | 0.304 | -- | -1.18 | -0.0277 | 19 | 23.7 | 10 | -- | -- |
| 33.83 | 0.271 | 10.2 | 0.947 | 0.613 | 0.718 | -- | -- | -0.0662 | 19 | 20.68 | 58 | -- | -- |
| 52 | 0.338 | 10.1 | 1.04 | -- | 0.355 | -- | -1.15 | -0.0408 | -- | 23.2 | 10 | -- | -- |
| 37.48 | 0.287 | 10.2 | 0.824 | 0.613 | -- | -0.0817 | -- | -0.12 | 19.4 | -- | -- | -- | -- |
| 37.49 | 0.287 | 10.2 | 0.826 | 0.614 | -- | -- | -- | -0.12 | 19.4 | -- | -- | -- | -- |
| 53.62 | 0.341 | 10.2 | 0.94 | -- | 0.707 | -- | -- | -0.0747 | -- | 20.64 | 24 | -- | -- |
| 55.1 | 0.346 | 10.2 | -- | 0.603 | 0.431 | -- | -- | -0.21 | 19.4 | 14.24 | 267 | -- | -- |
| 57.53 | 0.354 | 10.2 | 0.816 | -- | -- | -- | -- | -0.13 | -- | -- | -- | -- | -- |
| 55.46 | 0.348 | 10.2 | -- | 0.606 | -- | -- | -- | -0.212 | 19.5 | -- | -- | -- | -- |
| 74.46 | 0.403 | 10.2 | -- | -- | 0.554 | -- | -- | -0.218 | -- | 14.66 | 57 | -- | -- |
| 75.07 | 0.404 | 10.2 | -- | -- | -- | -- | -- | -0.221 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 31.43 | temperature | 10.0 | 30 | > th | dose dependent | rect. | 5 | 23 |
| 2 | 31.46 | radiation | 20.0 | 4320 | < th | dose independent | rect. | 20 | 10 |
| 3 | 31.46 | temperature | 15.0 | 270 | > th | dose dependent | rect. | 5 | 20 |
| 4 | 31.49 | temperature | 15.0 | 270 | > th | dose dependent | rect. | 9 | 15 |
| 7 | 31.61 | temperature | 20.0 | 270 | > th | dose independent | rect. | 5 | 19 |
| 10 | 31.63 | temperature | 25.0 | 720 | < th | dose independent | rect. | 1 | 2 |
| 12 | 31.64 | temperature | 15.0 | 720 | > th | dose dependent | rect. | 6 | 11 |
| 18 | 31.69 | temperature | 10.0 | 720 | > th | dose dependent | rect. | 8 | 9 |
| 29 | 31.73 | temperature | 30.0 | 720 | < th | dose dependent | rect. | 7 | 17 |
| 33 | 31.75 | humidity | 50.0 | 14400 | > th | dose independent | rect. | 18 | 12 |
| 46 | 31.83 | precipitation | 0.1 | 1440 | < th | dose independent | rect. | 10 | 3 |
| 47 | 31.83 | precipitation | 0.1 | 1440 | < th | dose dependent | rect. | 10 | 3 |
| 56 | 31.90 | temperature | 20.0 | 720 | > th | dose independent | sin | 23 | NA |
| 75 | 31.96 | temperature | 30.0 | 720 | < th | dose dependent | sin | 20 | NA |
| 79 | 31.97 | temperature | 10.0 | 720 | > th | dose dependent | sin | 0 | NA |
| 84 | 31.99 | temperature | 25.0 | 270 | < th | dose dependent | rect. | 11 | 20 |
| 91 | 32.00 | temperature | 30.0 | 270 | < th | dose dependent | rect. | 10 | 22 |
| 92 | 32.00 | temperature | 25.0 | 10 | < th | dose dependent | rect. | 12 | 22 |
| 112 | 32.06 | wind | 1.0 | 30 | > th | dose independent | rect. | 23 | 10 |
| 124 | 32.09 | temperature | 20.0 | 30 | > th | dose independent | rect. | 16 | 23 |
| 161 | 32.18 | temperature | 25.0 | 10 | < th | dose dependent | sin | 16 | NA |
| 168 | 32.18 | temperature | 25.0 | 90 | < th | dose dependent | rect. | 12 | 23 |
| 190 | 32.22 | temperature | 25.0 | 270 | < th | dose dependent | sin | 17 | NA |
| 191 | 32.22 | temperature | 30.0 | 720 | < th | dose dependent | rect. | 11 | 8 |
| 229 | 32.30 | temperature | 10.0 | 270 | > th | dose dependent | sin | 19 | NA |
| 275 | 32.36 | temperature | 15.0 | 10 | > th | dose dependent | rect. | 6 | 20 |
| 281 | 32.37 | temperature | 30.0 | 720 | < th | dose dependent | rect. | 18 | 6 |
| 289 | 32.38 | temperature | 10.0 | 10 | > th | dose dependent | sin | 17 | NA |
| 327 | 32.42 | temperature | 25.0 | 720 | < th | dose independent | rect. | 24 | 9 |
| 375 | 32.46 | temperature | 15.0 | 10 | > th | dose dependent | rect. | 9 | 17 |
| 377 | 32.46 | temperature | 10.0 | 90 | > th | dose dependent | rect. | 15 | 23 |
| 393 | 32.48 | temperature | 20.0 | 270 | < th | dose independent | rect. | 10 | 22 |
| 431 | 32.52 | temperature | 20.0 | 270 | > th | dose independent | sin | 20 | NA |
| 432 | 32.52 | temperature | 30.0 | 90 | < th | dose independent | rect. | 9 | 13 |
| 441 | 32.52 | temperature | 15.0 | 10 | > th | dose dependent | rect. | 8 | 20 |
| 461 | 32.54 | temperature | 20.0 | 90 | > th | dose independent | rect. | 8 | 23 |
| 477 | 32.55 | temperature | 25.0 | 10 | < th | dose dependent | rect. | 12 | 15 |
| 492 | 32.57 | temperature | 20.0 | 30 | > th | dose independent | rect. | 20 | 17 |
| 504 | 32.58 | temperature | 20.0 | 720 | < th | dose independent | rect. | 9 | 15 |
| 508 | 32.58 | temperature | 30.0 | 30 | < th | dose dependent | rect. | 23 | 10 |
| 515 | 32.58 | temperature | 10.0 | 720 | > th | dose dependent | rect. | 22 | 19 |
| 619 | 32.66 | temperature | 30.0 | 720 | < th | dose independent | rect. | 24 | 12 |
| 620 | 32.66 | temperature | 20.0 | 720 | < th | dose independent | rect. | 7 | 17 |
| 622 | 32.66 | temperature | 30.0 | 720 | < th | dose dependent | rect. | 21 | 2 |
| 640 | 32.67 | atmosphere | 1000.0 | 30 | > th | dose independent | rect. | 9 | 14 |
| 641 | 32.67 | temperature | 20.0 | 270 | < th | dose independent | rect. | 10 | 19 |
| 642 | 32.67 | temperature | 20.0 | 90 | < th | dose independent | rect. | 15 | 20 |
| 643 | 32.67 | temperature | 20.0 | 90 | < th | dose independent | rect. | 13 | 22 |
| 693 | 32.70 | temperature | 25.0 | 10 | < th | dose dependent | rect. | 5 | 23 |
| 696 | 32.71 | temperature | 20.0 | 270 | < th | dose independent | rect. | 10 | 17 |
| 701 | 32.71 | temperature | 20.0 | 30 | > th | dose independent | rect. | 20 | 23 |
| 730 | 32.73 | humidity | 50.0 | 14400 | > th | dose independent | rect. | 20 | 13 |
| 746 | 32.74 | temperature | 20.0 | 1440 | < th | dose independent | sin | 22 | NA |
| 762 | 32.75 | temperature | 20.0 | 1440 | < th | dose independent | rect. | 9 | 12 |
| 787 | 32.76 | temperature | 25.0 | 10 | < th | dose dependent | rect. | 23 | 23 |
| 788 | 32.77 | temperature | 20.0 | 270 | < th | dose independent | sin | 16 | NA |
| 794 | 32.77 | temperature | 25.0 | 10 | < th | dose dependent | no | NA | NA |
| 806 | 32.78 | temperature | 20.0 | 1440 | > th | dose independent | rect. | 9 | 12 |
| 808 | 32.78 | temperature | 20.0 | 1440 | < th | dose independent | rect. | 6 | 15 |
| 810 | 32.78 | temperature | 20.0 | 270 | < th | dose independent | rect. | 13 | 19 |
| 827 | 32.78 | temperature | 25.0 | 10 | < th | dose dependent | rect. | 7 | 23 |
| 829 | 32.78 | temperature | 25.0 | 10 | < th | dose dependent | rect. | 17 | 23 |
| 831 | 32.79 | temperature | 10.0 | 43200 | > th | dose independent | rect. | 9 | 10 |
| 863 | 32.80 | temperature | 20.0 | 10 | > th | dose dependent | rect. | 6 | 14 |
| 870 | 32.80 | temperature | 25.0 | 10 | < th | dose dependent | rect. | 9 | 23 |
| 871 | 32.80 | temperature | 25.0 | 10 | < th | dose dependent | rect. | 21 | 23 |
| 881 | 32.81 | temperature | 30.0 | 720 | < th | dose dependent | rect. | 13 | 2 |
| 894 | 32.81 | temperature | 25.0 | 10 | < th | dose dependent | rect. | 19 | 23 |
| 904 | 32.82 | temperature | 20.0 | 90 | < th | dose independent | rect. | 21 | 22 |
| 905 | 32.82 | temperature | 20.0 | 90 | < th | dose independent | rect. | 16 | 23 |
| 930 | 32.83 | temperature | 15.0 | 720 | > th | dose dependent | rect. | 5 | 4 |
| 948 | 32.84 | temperature | 20.0 | 90 | < th | dose independent | rect. | 3 | 23 |
| 960 | 32.84 | temperature | 10.0 | 30 | > th | dose dependent | rect. | 11 | 23 |
| 961 | 32.84 | temperature | 25.0 | 10 | < th | dose dependent | rect. | 3 | 23 |