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Notice!
This gene did NOT pass the analysis criteria (log2(expression) > 5 in more than 80% of samples & normality of residuals was not rejected).
The modeling results may be unreliable.

Os03g0746000

blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II

Description : Conserved hypothetical protein.


log2(Expression) ~ Norm(μ, σ2)

μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8

par. value (S.E.)
α : 4.23 (0.0397) R2 : 0.326
β1 : 0.726 (0.145) R2dD : 0.0382 R2D : 0.00404
β2 : 1.35 (0.104) R2dC : 0.251 R2C : 0.221
β3 : -- (--) R2dE : -- R2E : --
β4 : -- (--) R2dD*C : -- R2D*C : --
β5 : -- (--) R2dD*E : -- R2D*E : --
γ1 : 0.557 (0.0848) R2dN8 : 0.0856 R2N8 : 0.0397
σ : 0.747
deviance : 254.45
__
_____
C
peak time of C : 17.7
E
wheather : --
threshold : --
memory length : --
response mode : --
dose dependency : --
G
type of G : --
peak or start time of G : --
open length of G : --

__

Dependence on each variable

Residual plot

Process of the parameter reduction
(fixed parameters. wheather = temperature, response mode = > th, dose dependency = dose independent, type of G = no)

deviance σ α β1 β2 β3 β4 β5 γ1 peak time of C threshold memory length peak or start time of G open length of G
230.52 0.713 4.24 0.447 1.12 1.02 1.4 -2.21 0.587 18.1 30.01 80 -- --
231.36 0.708 4.22 0.626 1.13 0.792 1.34 -- 0.603 18 30.04 81 -- --
235.12 0.714 4.23 0.467 1.12 1.04 -- -1.68 0.6 18.1 30.05 79 -- --
232.91 0.711 4.23 0.575 0.988 0.915 -- -- 0.557 18.2 29.6 227 -- --
263.09 0.755 4.22 0.541 -- 1.41 -- 0.681 0.44 -- 28.88 365 -- --
246.89 0.737 4.23 0.737 1.34 -- 1.75 -- 0.55 17.8 -- -- -- --
254.45 0.747 4.23 0.726 1.35 -- -- -- 0.557 17.7 -- -- -- --
262.9 0.755 4.24 0.461 -- 1.4 -- -- 0.401 -- 28.64 374 -- --
241.43 0.724 4.25 -- 0.926 0.977 -- -- 0.459 18.3 29.45 231 -- --
348.87 0.873 4.21 0.684 -- -- -- -- 0.525 -- -- -- -- --
268.34 0.766 4.25 -- 1.34 -- -- -- 0.476 17.8 -- -- -- --
268.43 0.763 4.25 -- -- 1.44 -- -- 0.347 -- 28.69 369 -- --
361.21 0.887 4.23 -- -- -- -- -- 0.449 -- -- -- -- --

Results of the grid search

Summarized heatmap of deviance
 Histogram

Local optima within top1000 grid-points

rank deviance wheather threshold memory length response mode dose dependency type of G peak or start time of G open length of G
1 222.73 atmosphere 995 43200 > th dose independent rect. 14 8
2 222.88 atmosphere 995 43200 < th dose independent rect. 13 10
3 222.90 atmosphere 995 43200 > th dose independent rect. 13 10
4 222.92 atmosphere 995 43200 < th dose dependent rect. 15 7
5 223.01 atmosphere 995 43200 < th dose independent rect. 14 8
8 223.80 atmosphere 995 43200 > th dose independent sin 19 NA
13 224.30 atmosphere 995 43200 < th dose independent sin 19 NA
16 224.53 humidity 90 14400 > th dose dependent rect. 18 1
18 224.60 atmosphere 995 43200 < th dose independent rect. 11 13
25 224.98 humidity 90 14400 > th dose dependent rect. 6 1
27 225.05 temperature 15 270 > th dose dependent rect. 21 21
29 225.09 radiation 40 14400 < th dose dependent rect. 18 8
33 225.16 humidity 90 14400 > th dose dependent rect. 21 2
35 225.27 temperature 15 90 > th dose dependent rect. 1 17
38 225.36 wind 1 43200 > th dose independent rect. 8 1
50 225.52 atmosphere 995 43200 > th dose independent rect. 3 16
53 225.58 humidity 90 14400 > th dose dependent rect. 18 5
54 225.60 atmosphere 1000 14400 > th dose independent rect. 4 1
56 225.60 radiation 10 1440 < th dose dependent rect. 13 1
65 225.70 atmosphere 995 43200 > th dose independent rect. 14 5
72 225.79 atmosphere 1000 14400 < th dose independent rect. 3 2
83 225.89 radiation 10 1440 < th dose dependent rect. 12 3
84 225.90 atmosphere 995 43200 < th dose independent rect. 14 5
89 225.91 atmosphere 995 43200 < th dose dependent rect. 15 4
96 225.94 temperature 30 90 < th dose independent rect. 17 23
108 226.02 humidity 90 14400 > th dose independent rect. 6 1
110 226.03 humidity 90 14400 > th dose independent rect. 18 1
114 226.05 atmosphere 995 43200 < th dose independent rect. 3 16
125 226.09 atmosphere 995 43200 > th dose independent rect. 15 2
146 226.17 temperature 30 270 < th dose independent rect. 14 23
166 226.22 atmosphere 995 43200 < th dose independent rect. 15 2
167 226.22 atmosphere 1000 14400 > th dose independent rect. 23 9
168 226.22 atmosphere 1000 14400 < th dose independent rect. 23 9
178 226.24 wind 9 14400 > th dose independent rect. 20 4
182 226.24 atmosphere 1000 14400 > th dose independent rect. 21 14
204 226.27 temperature 20 270 > th dose independent rect. 21 21
243 226.36 atmosphere 1000 14400 < th dose independent sin 8 NA
278 226.42 atmosphere 1000 14400 > th dose independent sin 8 NA
314 226.50 humidity 90 14400 > th dose dependent rect. 9 2
356 226.59 humidity 90 14400 < th dose independent rect. 18 1
372 226.62 humidity 90 14400 > th dose dependent rect. 4 19
395 226.70 wind 5 14400 < th dose independent rect. 9 1
404 226.72 wind 9 14400 < th dose independent rect. 20 4
432 226.77 atmosphere 995 43200 < th dose dependent rect. 14 9
455 226.81 temperature 30 270 < th dose independent rect. 2 23
456 226.81 atmosphere 1000 14400 < th dose dependent rect. 11 14
476 226.86 atmosphere 995 43200 > th dose independent sin 1 NA
485 226.86 wind 7 14400 > th dose dependent rect. 20 4
491 226.87 humidity 90 14400 < th dose independent rect. 7 1
495 226.87 wind 9 14400 > th dose independent rect. 20 9
498 226.87 atmosphere 1000 14400 < th dose dependent sin 18 NA
506 226.88 atmosphere 1000 14400 < th dose dependent rect. 19 1
524 226.90 humidity 90 14400 > th dose dependent rect. 6 4
589 226.97 atmosphere 1000 14400 < th dose dependent rect. 17 4
600 226.98 wind 5 14400 > th dose independent rect. 9 1
605 226.98 temperature 30 270 < th dose independent rect. 3 20
612 226.98 wind 7 14400 > th dose dependent rect. 20 15
614 226.99 wind 9 14400 > th dose independent rect. 20 15
652 227.02 wind 9 14400 < th dose independent rect. 20 9
730 227.08 atmosphere 1000 14400 < th dose dependent rect. 15 23
735 227.09 atmosphere 1000 14400 < th dose dependent no NA NA
766 227.11 radiation 1 1440 > th dose independent rect. 8 5
783 227.11 atmosphere 1000 14400 < th dose dependent rect. 22 23
798 227.12 atmosphere 1000 14400 < th dose dependent rect. 20 23
801 227.13 temperature 30 30 < th dose independent rect. 7 18
818 227.14 humidity 90 14400 < th dose independent rect. 10 1
860 227.17 humidity 90 14400 > th dose independent rect. 10 1
910 227.22 wind 9 14400 < th dose independent rect. 20 15
967 227.29 atmosphere 995 43200 < th dose independent sin 1 NA
998 227.32 humidity 90 14400 > th dose dependent rect. 5 8