Os03g0745400
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Conserved hypothetical protein.
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Os03g0745400 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Conserved hypothetical protein.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = temperature,
response mode = > th, dose dependency = dose independent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 40.39 | 0.299 | 9.95 | -0.534 | 0.719 | -0.407 | 0.382 | 0.373 | 0.128 | 3.19 | 20.3 | 949 | -- | -- |
| 40.74 | 0.297 | 9.96 | -0.597 | 0.725 | -0.443 | 0.474 | -- | 0.111 | 3.15 | 20.31 | 960 | -- | -- |
| 40.8 | 0.298 | 9.95 | -0.52 | 0.713 | -0.396 | -- | 0.477 | 0.133 | 3.19 | 20.4 | 978 | -- | -- |
| 41.38 | 0.3 | 9.96 | -0.602 | 0.722 | -0.467 | -- | -- | 0.115 | 3.17 | 20.31 | 985 | -- | -- |
| 67.69 | 0.383 | 9.96 | -0.569 | -- | -0.39 | -- | 0.219 | 0.127 | -- | 20.59 | 395 | -- | -- |
| 45.97 | 0.318 | 9.98 | -0.775 | 0.684 | -- | 0.552 | -- | 0.0175 | 3.44 | -- | -- | -- | -- |
| 46.92 | 0.321 | 9.98 | -0.784 | 0.686 | -- | -- | -- | 0.0143 | 3.44 | -- | -- | -- | -- |
| 51.2 | 0.333 | 9.96 | -0.594 | -- | -0.512 | -- | -- | 0.151 | -- | 26.3 | 132 | -- | -- |
| 44.25 | 0.31 | 9.94 | -- | 0.656 | -0.783 | -- | -- | 0.214 | 3.36 | 18.4 | 21080 | -- | -- |
| 73.36 | 0.4 | 9.98 | -0.756 | -- | -- | -- | -- | 0.0325 | -- | -- | -- | -- | -- |
| 63.14 | 0.372 | 9.96 | -- | 0.671 | -- | -- | -- | 0.102 | 3.44 | -- | -- | -- | -- |
| 61.24 | 0.364 | 9.94 | -- | -- | -0.563 | -- | -- | 0.237 | -- | 26.49 | 137 | -- | -- |
| 88.42 | 0.439 | 9.96 | -- | -- | -- | -- | -- | 0.116 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 37.80 | temperature | 20 | 720 | > th | dose independent | rect. | 1 | 6 |
| 2 | 37.96 | temperature | 20 | 720 | > th | dose independent | rect. | 23 | 8 |
| 5 | 38.21 | temperature | 20 | 720 | > th | dose independent | rect. | 3 | 4 |
| 9 | 38.22 | atmosphere | 1000 | 43200 | < th | dose dependent | rect. | 12 | 3 |
| 10 | 38.25 | atmosphere | 1000 | 43200 | < th | dose dependent | rect. | 12 | 1 |
| 17 | 38.33 | humidity | 90 | 4320 | > th | dose dependent | rect. | 6 | 2 |
| 26 | 38.42 | humidity | 90 | 4320 | > th | dose dependent | rect. | 6 | 5 |
| 35 | 38.50 | temperature | 20 | 720 | > th | dose independent | sin | 8 | NA |
| 54 | 38.65 | humidity | 90 | 14400 | < th | dose independent | rect. | 7 | 1 |
| 56 | 38.66 | humidity | 80 | 14400 | > th | dose dependent | rect. | 21 | 2 |
| 58 | 38.68 | atmosphere | 995 | 43200 | > th | dose independent | rect. | 12 | 11 |
| 63 | 38.70 | temperature | 20 | 720 | > th | dose dependent | rect. | 4 | 5 |
| 70 | 38.73 | atmosphere | 995 | 43200 | < th | dose independent | rect. | 12 | 11 |
| 78 | 38.75 | temperature | 20 | 720 | > th | dose independent | rect. | 21 | 16 |
| 82 | 38.77 | atmosphere | 995 | 43200 | > th | dose independent | sin | 19 | NA |
| 92 | 38.80 | temperature | 20 | 720 | < th | dose independent | rect. | 23 | 10 |
| 94 | 38.81 | atmosphere | 995 | 43200 | > th | dose independent | rect. | 11 | 13 |
| 95 | 38.81 | atmosphere | 995 | 43200 | < th | dose independent | rect. | 11 | 13 |
| 105 | 38.84 | temperature | 20 | 1440 | < th | dose independent | rect. | 22 | 3 |
| 106 | 38.84 | temperature | 20 | 720 | > th | dose dependent | rect. | 1 | 9 |
| 108 | 38.85 | atmosphere | 995 | 43200 | < th | dose independent | sin | 19 | NA |
| 116 | 38.86 | temperature | 30 | 720 | < th | dose dependent | rect. | 7 | 2 |
| 124 | 38.88 | temperature | 20 | 1440 | > th | dose independent | rect. | 22 | 3 |
| 129 | 38.89 | temperature | 20 | 1440 | < th | dose independent | rect. | 23 | 1 |
| 157 | 38.96 | temperature | 20 | 720 | < th | dose independent | rect. | 3 | 4 |
| 172 | 38.97 | atmosphere | 995 | 43200 | < th | dose dependent | rect. | 14 | 9 |
| 173 | 38.98 | temperature | 20 | 1440 | > th | dose independent | rect. | 23 | 1 |
| 178 | 38.98 | temperature | 20 | 720 | > th | dose dependent | rect. | 1 | 12 |
| 184 | 39.00 | temperature | 20 | 720 | < th | dose independent | rect. | 5 | 2 |
| 190 | 39.01 | temperature | 20 | 720 | < th | dose independent | sin | 7 | NA |
| 205 | 39.03 | humidity | 90 | 14400 | < th | dose independent | rect. | 21 | 2 |
| 213 | 39.04 | humidity | 90 | 14400 | > th | dose independent | rect. | 7 | 1 |
| 226 | 39.06 | humidity | 90 | 14400 | < th | dose independent | rect. | 4 | 19 |
| 232 | 39.07 | atmosphere | 995 | 43200 | < th | dose independent | rect. | 9 | 16 |
| 234 | 39.07 | temperature | 20 | 720 | > th | dose dependent | sin | 6 | NA |
| 247 | 39.08 | humidity | 80 | 14400 | > th | dose dependent | rect. | 17 | 17 |
| 251 | 39.09 | humidity | 90 | 14400 | < th | dose independent | rect. | 6 | 17 |
| 256 | 39.09 | temperature | 30 | 720 | < th | dose dependent | rect. | 2 | 9 |
| 259 | 39.10 | humidity | 90 | 14400 | < th | dose independent | rect. | 6 | 5 |
| 269 | 39.11 | humidity | 90 | 14400 | > th | dose independent | rect. | 18 | 1 |
| 298 | 39.14 | humidity | 90 | 14400 | > th | dose independent | rect. | 6 | 5 |
| 299 | 39.14 | humidity | 90 | 14400 | < th | dose independent | rect. | 17 | 6 |
| 307 | 39.14 | humidity | 90 | 14400 | > th | dose independent | rect. | 4 | 19 |
| 308 | 39.14 | atmosphere | 995 | 43200 | > th | dose independent | rect. | 4 | 19 |
| 313 | 39.14 | humidity | 90 | 14400 | > th | dose dependent | rect. | 6 | 18 |
| 319 | 39.15 | humidity | 90 | 14400 | > th | dose independent | rect. | 6 | 17 |
| 333 | 39.16 | atmosphere | 995 | 43200 | > th | dose independent | rect. | 2 | 17 |
| 382 | 39.19 | humidity | 90 | 14400 | > th | dose independent | rect. | 17 | 6 |
| 390 | 39.20 | radiation | 20 | 4320 | > th | dose independent | rect. | 7 | 1 |
| 404 | 39.21 | humidity | 90 | 14400 | < th | dose independent | rect. | 18 | 1 |
| 407 | 39.21 | humidity | 90 | 14400 | < th | dose independent | rect. | 14 | 9 |
| 428 | 39.22 | temperature | 20 | 720 | > th | dose dependent | rect. | 6 | 1 |
| 465 | 39.24 | humidity | 90 | 14400 | < th | dose independent | rect. | 4 | 15 |
| 475 | 39.24 | humidity | 80 | 14400 | > th | dose dependent | rect. | 4 | 7 |
| 509 | 39.26 | atmosphere | 995 | 43200 | < th | dose independent | rect. | 2 | 17 |
| 538 | 39.27 | humidity | 80 | 14400 | > th | dose dependent | sin | 14 | NA |
| 607 | 39.29 | humidity | 70 | 14400 | > th | dose dependent | rect. | 17 | 2 |
| 616 | 39.30 | humidity | 90 | 14400 | > th | dose independent | rect. | 21 | 1 |
| 645 | 39.31 | humidity | 90 | 14400 | > th | dose independent | rect. | 6 | 8 |
| 671 | 39.32 | humidity | 90 | 14400 | > th | dose independent | sin | 19 | NA |
| 750 | 39.34 | humidity | 90 | 14400 | < th | dose independent | sin | 23 | NA |
| 784 | 39.35 | humidity | 90 | 14400 | < th | dose independent | sin | 21 | NA |
| 822 | 39.36 | temperature | 20 | 1440 | < th | dose independent | rect. | 1 | 1 |
| 838 | 39.36 | humidity | 90 | 14400 | > th | dose dependent | rect. | 6 | 13 |
| 906 | 39.38 | radiation | 30 | 1440 | < th | dose independent | rect. | 15 | 18 |
| 912 | 39.38 | humidity | 80 | 14400 | > th | dose dependent | no | NA | NA |