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Notice!
This gene did NOT pass the analysis criteria (log2(expression) > 5 in more than 80% of samples & normality of residuals was not rejected).
The modeling results may be unreliable.

Os03g0745000

blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II

Description : Winged helix repressor DNA-binding domain containing protein.


log2(Expression) ~ Norm(μ, σ2)

μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8

par. value (S.E.)
α : 3.76 (0.044) R2 : 0.313
β1 : 0.764 (0.163) R2dD : 0.0344 R2D : 0.0643
β2 : -- (--) R2dC : -- R2C : --
β3 : 5.85 (0.465) R2dE : 0.246 R2E : 0.277
β4 : -- (--) R2dD*C : -- R2D*C : --
β5 : -- (--) R2dD*E : -- R2D*E : --
γ1 : -0.0297 (0.0943) R2dN8 : 0.000662 R2N8 : 0.00269
σ : 0.824
deviance : 312.67
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_____
C
peak time of C : --
E
wheather : wind
threshold : 1.878
memory length : 64
response mode : < th
dose dependency : dose dependent
G
type of G : rect.
peak or start time of G : 7.27
open length of G : 10.2

__

Dependence on each variable

Residual plot

Process of the parameter reduction
(fixed parameters. wheather = wind, response mode = < th, dose dependency = dose dependent, type of G = rect.)

deviance σ α β1 β2 β3 β4 β5 γ1 peak time of C threshold memory length peak or start time of G open length of G
283.69 0.791 3.75 0.827 0.664 5.26 1.74 4.83 -0.105 11.7 0.9427 62 6.86 9.7
284.12 0.785 3.76 0.808 0.651 5.83 1.81 -- -0.0988 11.7 1.034 62 6.92 10.7
295.57 0.801 3.74 0.889 0.645 4.74 -- 10.1 -0.0987 11.9 0.9 64 6.97 9.55
297.44 0.803 3.74 0.894 0.632 5.78 -- -- -0.0684 12 1.135 64 6.98 9.95
321.02 0.834 3.74 0.885 -- 5.49 -- 8.58 -0.0631 -- 0.9394 64 6.97 8.88
354.71 0.883 3.77 0.959 0.84 -- 2.3 -- -0.161 11.4 -- -- -- --
377.44 0.91 3.76 1.05 0.83 -- -- -- -0.151 11.7 -- -- -- --
312.67 0.824 3.76 0.764 -- 5.85 -- -- -0.0297 -- 1.878 64 7.27 10.2
316.36 0.828 3.77 -- 0.573 6.14 -- -- -0.158 11.9 1.178 64 6.98 10.6
420.74 0.958 3.78 1.03 -- -- -- -- -0.16 -- -- -- -- --
406.77 0.943 3.79 -- 0.818 -- -- -- -0.268 11.6 -- -- -- --
326.42 0.841 3.78 -- -- 5.94 -- -- -0.139 -- 1.978 64 7.28 10.1
448.8 0.989 3.81 -- -- -- -- -- -0.275 -- -- -- -- --

Results of the grid search

Summarized heatmap of deviance
 Histogram

Local optima within top1000 grid-points

rank deviance wheather threshold memory length response mode dose dependency type of G peak or start time of G open length of G
1 289.31 wind 1.0 90 < th dose dependent rect. 7 10
8 291.37 wind 1.0 90 < th dose independent rect. 7 10
75 308.12 radiation 30.0 43200 < th dose dependent rect. 23 1
81 309.03 wind 1.0 90 < th dose dependent sin 21 NA
85 310.06 wind 1.0 90 < th dose independent sin 21 NA
86 310.29 wind 1.0 90 < th dose independent rect. 9 8
125 312.82 wind 9.0 1440 < th dose independent rect. 23 1
126 312.82 temperature 10.0 1440 > th dose independent rect. 23 1
129 312.82 temperature 30.0 1440 < th dose independent rect. 23 1
133 312.82 humidity 50.0 1440 > th dose independent rect. 23 1
143 312.82 atmosphere 995.0 1440 > th dose independent rect. 23 1
144 312.82 radiation 1.0 1440 < th dose independent rect. 23 1
164 312.82 temperature 10.0 1440 > th dose independent rect. 24 23
167 312.82 radiation 1.0 1440 < th dose dependent rect. 23 1
172 312.86 temperature 25.0 30 > th dose independent rect. 22 1
174 312.92 wind 1.0 90 < th dose dependent rect. 13 4
178 313.11 temperature 25.0 30 > th dose dependent rect. 22 1
183 313.28 wind 1.0 90 < th dose dependent rect. 9 8
189 313.38 atmosphere 1005.0 30 > th dose dependent rect. 22 1
190 313.45 wind 3.0 30 < th dose independent rect. 22 1
192 313.53 humidity 90.0 30 < th dose independent rect. 22 1
193 313.60 atmosphere 1005.0 30 > th dose independent rect. 22 1
199 313.71 humidity 80.0 30 > th dose independent rect. 22 1
211 313.92 wind 5.0 30 < th dose dependent rect. 22 1
212 313.97 precipitation 0.1 30 < th dose independent rect. 22 1
213 313.97 precipitation 0.1 30 < th dose dependent rect. 22 1
217 314.19 wind 1.0 30 > th dose independent rect. 22 1
223 314.26 temperature 10.0 30 > th dose independent rect. 22 1
225 314.26 temperature 30.0 30 < th dose independent rect. 22 1
226 314.26 humidity 50.0 30 > th dose independent rect. 22 1
230 314.26 atmosphere 1010.0 30 < th dose independent rect. 22 1
232 314.26 radiation 1.0 30 < th dose independent rect. 22 1
237 314.26 temperature 10.0 30 > th dose independent rect. 23 23
238 314.26 radiation 1.0 30 < th dose dependent rect. 22 1
244 314.34 humidity 50.0 30 > th dose dependent rect. 22 1
258 314.77 wind 1.0 90 < th dose dependent rect. 11 5
268 314.87 wind 1.0 90 < th dose independent rect. 13 4
271 314.95 humidity 90.0 30 < th dose dependent rect. 22 1
273 315.12 wind 1.0 90 > th dose independent sin 22 NA
275 315.25 atmosphere 1015.0 30 < th dose dependent rect. 22 1
295 315.84 wind 1.0 30 > th dose dependent rect. 22 1
312 315.93 atmosphere 1000.0 30 > th dose independent rect. 23 23
316 316.06 wind 1.0 10 < th dose dependent rect. 11 7
352 316.58 temperature 30.0 30 < th dose dependent rect. 22 1
382 317.22 wind 1.0 10 < th dose independent rect. 12 2
397 317.46 humidity 50.0 30 > th dose independent rect. 23 23
420 318.05 wind 1.0 10 < th dose independent rect. 14 4
565 319.53 precipitation 0.1 1440 < th dose independent rect. 23 1
566 319.53 precipitation 0.1 1440 < th dose dependent rect. 23 1
576 319.64 wind 9.0 30 < th dose independent rect. 23 23
626 320.84 wind 1.0 10 < th dose independent rect. 7 1
638 321.40 precipitation 0.1 30 < th dose independent rect. 23 23
639 321.40 precipitation 0.1 30 < th dose dependent rect. 23 23
660 321.99 radiation 30.0 30 < th dose dependent rect. 23 23
697 323.22 wind 1.0 10 < th dose dependent rect. 7 1
753 324.66 wind 1.0 90 > th dose independent rect. 11 10
758 324.93 radiation 20.0 10 > th dose independent rect. 13 22
818 326.16 radiation 20.0 10 < th dose independent rect. 23 23
838 326.87 wind 1.0 90 < th dose dependent rect. 7 4
899 327.93 radiation 20.0 10 > th dose independent rect. 15 20
924 328.32 radiation 20.0 10 > th dose independent sin 9 NA
926 328.32 wind 1.0 90 < th dose dependent rect. 7 1
930 328.37 radiation 20.0 10 > th dose independent rect. 7 4
974 328.84 temperature 30.0 30 < th dose independent rect. 23 23
978 328.89 radiation 20.0 10 < th dose independent sin 8 NA