Os03g0744300
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Protein kinase-like domain containing protein.
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Os03g0744300 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Protein kinase-like domain containing protein.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = radiation,
response mode = < th, dose dependency = dose dependent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 19.63 | 0.208 | 9.67 | 0.179 | 0.289 | 0.56 | -0.148 | -0.517 | -0.112 | 9.78 | 0.3512 | 1345 | -- | -- |
| 19.73 | 0.207 | 9.67 | 0.178 | 0.28 | 0.696 | -0.295 | -- | -0.112 | 9.54 | 0.36 | 1357 | -- | -- |
| 19.68 | 0.207 | 9.67 | 0.177 | 0.303 | 0.497 | -- | -0.724 | -0.112 | 9.98 | 0.393 | 1344 | -- | -- |
| 19.98 | 0.208 | 9.67 | 0.13 | 0.292 | 0.641 | -- | -- | -0.125 | 9.79 | 0.3601 | 1360 | -- | -- |
| 20.35 | 0.21 | 9.67 | 0.174 | -- | 0.86 | -- | -0.552 | -0.115 | -- | 0.46 | 1209 | -- | -- |
| 24.04 | 0.23 | 9.69 | -0.0243 | 0.404 | -- | -0.183 | -- | -0.189 | 10 | -- | -- | -- | -- |
| 24.16 | 0.23 | 9.69 | -0.031 | 0.405 | -- | -- | -- | -0.19 | 10.1 | -- | -- | -- | -- |
| 20.7 | 0.212 | 9.68 | 0.145 | -- | 0.929 | -- | -- | -0.119 | -- | 0.37 | 1236 | -- | -- |
| 20.37 | 0.21 | 9.67 | -- | 0.293 | 0.597 | -- | -- | -0.125 | 9.84 | 0.39 | 1357 | -- | -- |
| 34.07 | 0.273 | 9.7 | -0.0365 | -- | -- | -- | -- | -0.19 | -- | -- | -- | -- | -- |
| 24.19 | 0.23 | 9.69 | -- | 0.405 | -- | -- | -- | -0.186 | 10.1 | -- | -- | -- | -- |
| 21.14 | 0.214 | 9.68 | -- | -- | 0.859 | -- | -- | -0.119 | -- | 0.42 | 1219 | -- | -- |
| 34.1 | 0.273 | 9.7 | -- | -- | -- | -- | -- | -0.186 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 19.24 | radiation | 1.0 | 720 | < th | dose dependent | rect. | 5 | 20 |
| 3 | 19.30 | radiation | 1.0 | 1440 | > th | dose independent | rect. | 8 | 11 |
| 4 | 19.30 | radiation | 1.0 | 1440 | < th | dose independent | rect. | 8 | 11 |
| 11 | 19.30 | radiation | 1.0 | 1440 | < th | dose independent | rect. | 8 | 17 |
| 25 | 19.34 | radiation | 1.0 | 1440 | < th | dose dependent | rect. | 8 | 11 |
| 26 | 19.34 | radiation | 1.0 | 1440 | < th | dose dependent | rect. | 8 | 17 |
| 80 | 19.41 | radiation | 1.0 | 1440 | > th | dose independent | sin | 18 | NA |
| 91 | 19.42 | radiation | 1.0 | 1440 | < th | dose independent | sin | 18 | NA |
| 92 | 19.42 | radiation | 1.0 | 1440 | > th | dose independent | rect. | 12 | 7 |
| 100 | 19.42 | radiation | 1.0 | 1440 | < th | dose independent | rect. | 12 | 13 |
| 109 | 19.43 | radiation | 1.0 | 1440 | < th | dose independent | rect. | 12 | 7 |
| 175 | 19.48 | radiation | 1.0 | 1440 | < th | dose dependent | sin | 19 | NA |
| 176 | 19.48 | radiation | 1.0 | 1440 | < th | dose dependent | rect. | 12 | 7 |
| 177 | 19.48 | radiation | 1.0 | 1440 | < th | dose dependent | rect. | 12 | 13 |
| 313 | 19.66 | radiation | 1.0 | 720 | < th | dose dependent | rect. | 15 | 10 |
| 340 | 19.70 | radiation | 1.0 | 720 | < th | dose independent | rect. | 5 | 20 |
| 373 | 19.74 | humidity | 90.0 | 720 | > th | dose dependent | rect. | 9 | 15 |
| 430 | 19.84 | radiation | 1.0 | 720 | < th | dose dependent | rect. | 20 | 23 |
| 553 | 20.03 | radiation | 1.0 | 1440 | < th | dose dependent | rect. | 18 | 23 |
| 564 | 20.05 | radiation | 20.0 | 14400 | < th | dose independent | rect. | 18 | 12 |
| 572 | 20.06 | temperature | 25.0 | 720 | < th | dose independent | rect. | 11 | 13 |
| 574 | 20.06 | radiation | 1.0 | 1440 | < th | dose dependent | no | NA | NA |
| 575 | 20.06 | humidity | 60.0 | 720 | > th | dose dependent | rect. | 18 | 6 |
| 579 | 20.06 | radiation | 1.0 | 1440 | < th | dose dependent | rect. | 24 | 19 |
| 609 | 20.07 | humidity | 90.0 | 720 | > th | dose dependent | rect. | 20 | 3 |
| 636 | 20.07 | radiation | 1.0 | 1440 | < th | dose dependent | rect. | 11 | 23 |
| 702 | 20.11 | wind | 5.0 | 14400 | > th | dose dependent | rect. | 14 | 1 |
| 732 | 20.13 | precipitation | 0.1 | 14400 | > th | dose independent | rect. | 4 | 4 |
| 749 | 20.14 | precipitation | 0.1 | 14400 | > th | dose independent | rect. | 5 | 2 |
| 750 | 20.14 | temperature | 25.0 | 720 | < th | dose independent | rect. | 14 | 9 |
| 764 | 20.15 | wind | 7.0 | 14400 | > th | dose independent | rect. | 14 | 2 |
| 770 | 20.15 | precipitation | 0.1 | 14400 | > th | dose dependent | rect. | 5 | 2 |
| 780 | 20.16 | precipitation | 0.1 | 14400 | < th | dose independent | rect. | 4 | 4 |
| 787 | 20.16 | precipitation | 0.1 | 14400 | < th | dose dependent | rect. | 4 | 4 |
| 798 | 20.17 | wind | 5.0 | 14400 | < th | dose independent | rect. | 11 | 4 |
| 807 | 20.18 | precipitation | 0.1 | 14400 | < th | dose independent | rect. | 5 | 2 |
| 818 | 20.18 | precipitation | 0.1 | 14400 | < th | dose dependent | rect. | 5 | 2 |
| 819 | 20.18 | wind | 3.0 | 14400 | > th | dose dependent | rect. | 11 | 4 |
| 824 | 20.19 | wind | 7.0 | 14400 | < th | dose independent | rect. | 14 | 2 |
| 840 | 20.19 | precipitation | 0.1 | 14400 | > th | dose dependent | rect. | 4 | 4 |
| 845 | 20.20 | wind | 5.0 | 14400 | > th | dose independent | rect. | 11 | 4 |
| 907 | 20.24 | humidity | 90.0 | 720 | > th | dose independent | rect. | 21 | 1 |
| 908 | 20.24 | wind | 5.0 | 14400 | > th | dose independent | rect. | 11 | 6 |
| 985 | 20.27 | humidity | 80.0 | 1440 | > th | dose dependent | rect. | 11 | 2 |