Os03g0742400
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Similar to MRS2-7.
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Os03g0742400 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Similar to MRS2-7.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = temperature,
response mode = < th, dose dependency = dose dependent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 209.55 | 0.68 | 3.56 | 0.441 | 0.152 | 1.26 | -0.0338 | 2.51 | -0.163 | 9.22 | 24.1 | 845 | -- | -- |
| 216.33 | 0.685 | 3.5 | 0.797 | 0.145 | 0.998 | 0.542 | -- | -0.0703 | 11 | 25 | 740 | -- | -- |
| 209.56 | 0.674 | 3.56 | 0.442 | 0.151 | 1.26 | -- | 2.5 | -0.164 | 9.26 | 24.1 | 845 | -- | -- |
| 217.46 | 0.687 | 3.51 | 0.838 | 0.103 | 0.946 | -- | -- | -0.0648 | 10.8 | 27.12 | 740 | -- | -- |
| 210.8 | 0.676 | 3.56 | 0.449 | -- | 1.32 | -- | 2.53 | -0.149 | -- | 24.2 | 831 | -- | -- |
| 229.55 | 0.71 | 3.55 | 0.55 | 0.286 | -- | 0.515 | -- | -0.275 | 10.4 | -- | -- | -- | -- |
| 230.61 | 0.711 | 3.55 | 0.569 | 0.285 | -- | -- | -- | -0.274 | 10.1 | -- | -- | -- | -- |
| 217.99 | 0.688 | 3.51 | 0.857 | -- | 1.02 | -- | -- | -0.0544 | -- | 27.85 | 752 | -- | -- |
| 233.93 | 0.712 | 3.55 | -- | 0.195 | 0.579 | -- | -- | -0.257 | 9.32 | 33.99 | 994 | -- | -- |
| 235.53 | 0.717 | 3.56 | 0.565 | -- | -- | -- | -- | -0.274 | -- | -- | -- | -- | -- |
| 239.15 | 0.723 | 3.56 | -- | 0.283 | -- | -- | -- | -0.337 | 9.99 | -- | -- | -- | -- |
| 235.43 | 0.715 | 3.55 | -- | -- | 0.692 | -- | -- | -0.249 | -- | 37.07 | 845 | -- | -- |
| 243.97 | 0.729 | 3.57 | -- | -- | -- | -- | -- | -0.337 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 206.03 | temperature | 20.0 | 1440 | < th | dose independent | rect. | 5 | 1 |
| 2 | 206.28 | temperature | 20.0 | 1440 | > th | dose independent | rect. | 5 | 1 |
| 20 | 209.02 | temperature | 20.0 | 720 | > th | dose independent | rect. | 3 | 17 |
| 23 | 209.04 | temperature | 25.0 | 720 | < th | dose dependent | rect. | 12 | 20 |
| 25 | 209.08 | temperature | 20.0 | 1440 | > th | dose dependent | rect. | 5 | 1 |
| 42 | 209.52 | temperature | 30.0 | 720 | < th | dose dependent | rect. | 19 | 13 |
| 43 | 209.52 | temperature | 10.0 | 720 | > th | dose dependent | rect. | 18 | 15 |
| 62 | 209.77 | temperature | 20.0 | 720 | < th | dose independent | rect. | 3 | 18 |
| 64 | 209.78 | temperature | 20.0 | 1440 | > th | dose dependent | rect. | 1 | 6 |
| 70 | 209.83 | temperature | 20.0 | 1440 | > th | dose dependent | rect. | 22 | 9 |
| 89 | 209.95 | temperature | 20.0 | 1440 | > th | dose independent | rect. | 3 | 13 |
| 132 | 210.12 | temperature | 20.0 | 4320 | > th | dose independent | rect. | 20 | 11 |
| 146 | 210.17 | temperature | 25.0 | 1440 | < th | dose dependent | rect. | 19 | 3 |
| 160 | 210.22 | temperature | 20.0 | 1440 | < th | dose independent | rect. | 3 | 14 |
| 182 | 210.27 | temperature | 25.0 | 1440 | < th | dose dependent | sin | 15 | NA |
| 185 | 210.27 | temperature | 25.0 | 1440 | < th | dose dependent | rect. | 13 | 13 |
| 191 | 210.29 | temperature | 20.0 | 4320 | < th | dose independent | rect. | 20 | 11 |
| 209 | 210.33 | temperature | 30.0 | 720 | < th | dose dependent | sin | 10 | NA |
| 278 | 210.47 | temperature | 25.0 | 1440 | < th | dose dependent | rect. | 5 | 1 |
| 286 | 210.49 | temperature | 10.0 | 1440 | > th | dose dependent | rect. | 5 | 1 |
| 289 | 210.49 | temperature | 25.0 | 720 | < th | dose dependent | rect. | 20 | 22 |
| 298 | 210.50 | temperature | 25.0 | 720 | < th | dose dependent | rect. | 4 | 23 |
| 309 | 210.52 | temperature | 10.0 | 720 | > th | dose dependent | sin | 10 | NA |
| 320 | 210.53 | temperature | 25.0 | 1440 | < th | dose dependent | rect. | 18 | 7 |
| 370 | 210.61 | temperature | 25.0 | 720 | < th | dose dependent | no | NA | NA |
| 379 | 210.63 | temperature | 25.0 | 720 | < th | dose dependent | rect. | 24 | 23 |
| 499 | 210.83 | temperature | 20.0 | 4320 | > th | dose independent | rect. | 22 | 1 |
| 678 | 211.08 | temperature | 20.0 | 4320 | > th | dose independent | sin | 12 | NA |
| 781 | 211.21 | precipitation | 0.1 | 43200 | > th | dose dependent | rect. | 20 | 3 |
| 810 | 211.25 | temperature | 20.0 | 4320 | < th | dose independent | sin | 12 | NA |
| 847 | 211.29 | precipitation | 0.1 | 43200 | > th | dose dependent | rect. | 21 | 1 |
| 876 | 211.34 | temperature | 25.0 | 4320 | < th | dose dependent | rect. | 1 | 1 |