Os03g0741600
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Prenylated rab acceptor PRA1 family protein.
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Os03g0741600 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Prenylated rab acceptor PRA1 family protein.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = atmosphere,
response mode = > th, dose dependency = dose dependent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 39.01 | 0.293 | 10.3 | 0.847 | 0.35 | 0.567 | 0.443 | -0.237 | 0.0674 | 21.3 | 1003 | 10141 | -- | -- |
| 39.09 | 0.291 | 10.3 | 0.794 | 0.35 | 0.566 | 0.424 | -- | 0.0515 | 21.3 | 1003 | 10054 | -- | -- |
| 39.66 | 0.293 | 10.3 | 0.822 | 0.342 | 0.543 | -- | -0.159 | 0.082 | 21.2 | 1004 | 10155 | -- | -- |
| 39.72 | 0.294 | 10.3 | 0.776 | 0.349 | 0.535 | -- | -- | 0.0741 | 21.2 | 1004 | 10134 | -- | -- |
| 46.7 | 0.318 | 10.3 | 0.838 | -- | 0.54 | -- | -0.214 | 0.0855 | -- | 1004 | 10149 | -- | -- |
| 48.24 | 0.326 | 10.3 | 0.632 | 0.355 | -- | 0.414 | -- | 0.0232 | 21.1 | -- | -- | -- | -- |
| 48.84 | 0.327 | 10.3 | 0.618 | 0.354 | -- | -- | -- | 0.0229 | 21.1 | -- | -- | -- | -- |
| 46.78 | 0.319 | 10.3 | 0.78 | -- | 0.539 | -- | -- | 0.0767 | -- | 1004 | 10126 | -- | -- |
| 54.42 | 0.344 | 10.3 | -- | 0.351 | 0.376 | -- | -- | -0.0268 | 21.3 | 1004 | 10750 | -- | -- |
| 56.05 | 0.35 | 10.3 | 0.619 | -- | -- | -- | -- | 0.0209 | -- | -- | -- | -- | -- |
| 58.9 | 0.359 | 10.3 | -- | 0.353 | -- | -- | -- | -0.0459 | 21.2 | -- | -- | -- | -- |
| 61.58 | 0.365 | 10.3 | -- | -- | 0.373 | -- | -- | -0.0238 | -- | 1004 | 10780 | -- | -- |
| 66.15 | 0.38 | 10.3 | -- | -- | -- | -- | -- | -0.0478 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 36.00 | temperature | 15.0 | 270 | > th | dose dependent | rect. | 18 | 9 |
| 3 | 36.16 | temperature | 15.0 | 30 | > th | dose dependent | rect. | 9 | 19 |
| 8 | 36.78 | temperature | 20.0 | 270 | > th | dose dependent | rect. | 18 | 18 |
| 15 | 36.96 | temperature | 20.0 | 90 | > th | dose dependent | rect. | 20 | 8 |
| 17 | 37.04 | temperature | 15.0 | 10 | > th | dose dependent | rect. | 9 | 21 |
| 24 | 37.11 | temperature | 10.0 | 270 | > th | dose dependent | rect. | 17 | 21 |
| 35 | 37.34 | temperature | 20.0 | 90 | > th | dose dependent | rect. | 20 | 18 |
| 57 | 37.73 | temperature | 10.0 | 90 | > th | dose dependent | rect. | 9 | 14 |
| 70 | 37.91 | temperature | 10.0 | 270 | > th | dose dependent | rect. | 7 | 19 |
| 96 | 38.19 | radiation | 20.0 | 14400 | < th | dose independent | rect. | 21 | 9 |
| 118 | 38.37 | humidity | 80.0 | 43200 | < th | dose dependent | rect. | 7 | 1 |
| 133 | 38.47 | temperature | 25.0 | 270 | > th | dose independent | rect. | 17 | 20 |
| 142 | 38.53 | humidity | 80.0 | 43200 | < th | dose independent | rect. | 6 | 2 |
| 151 | 38.65 | atmosphere | 1010.0 | 4320 | > th | dose independent | rect. | 9 | 3 |
| 167 | 38.75 | atmosphere | 1010.0 | 4320 | < th | dose independent | rect. | 11 | 1 |
| 176 | 38.79 | atmosphere | 1010.0 | 4320 | < th | dose independent | rect. | 9 | 3 |
| 231 | 38.97 | atmosphere | 1010.0 | 4320 | > th | dose independent | rect. | 8 | 14 |
| 253 | 39.01 | atmosphere | 1010.0 | 4320 | < th | dose independent | rect. | 8 | 14 |
| 273 | 39.04 | atmosphere | 1010.0 | 4320 | > th | dose independent | sin | 23 | NA |
| 329 | 39.09 | atmosphere | 1010.0 | 4320 | < th | dose independent | sin | 22 | NA |
| 393 | 39.14 | temperature | 25.0 | 90 | > th | dose independent | rect. | 9 | 18 |
| 442 | 39.18 | temperature | 20.0 | 4320 | < th | dose independent | rect. | 20 | 2 |
| 460 | 39.18 | precipitation | 0.1 | 43200 | > th | dose dependent | rect. | 14 | 5 |
| 463 | 39.19 | temperature | 20.0 | 4320 | > th | dose independent | rect. | 20 | 2 |
| 495 | 39.20 | atmosphere | 1010.0 | 4320 | > th | dose independent | rect. | 19 | 22 |
| 496 | 39.20 | radiation | 40.0 | 4320 | < th | dose dependent | rect. | 18 | 2 |
| 499 | 39.21 | atmosphere | 1010.0 | 4320 | > th | dose independent | no | NA | NA |
| 501 | 39.21 | humidity | 80.0 | 43200 | > th | dose independent | rect. | 17 | 1 |
| 502 | 39.21 | humidity | 80.0 | 43200 | < th | dose independent | rect. | 17 | 1 |
| 518 | 39.21 | atmosphere | 1010.0 | 4320 | > th | dose independent | rect. | 19 | 20 |
| 537 | 39.22 | precipitation | 0.1 | 43200 | < th | dose independent | rect. | 14 | 4 |
| 551 | 39.22 | atmosphere | 1010.0 | 4320 | > th | dose independent | rect. | 16 | 22 |
| 554 | 39.22 | atmosphere | 1010.0 | 4320 | > th | dose independent | rect. | 13 | 23 |
| 559 | 39.22 | precipitation | 0.1 | 43200 | < th | dose dependent | rect. | 14 | 4 |
| 590 | 39.24 | precipitation | 0.1 | 43200 | > th | dose independent | rect. | 14 | 4 |
| 616 | 39.25 | atmosphere | 1010.0 | 4320 | > th | dose independent | rect. | 23 | 18 |
| 631 | 39.25 | atmosphere | 1010.0 | 4320 | > th | dose independent | rect. | 11 | 23 |
| 637 | 39.26 | wind | 9.0 | 43200 | < th | dose independent | rect. | 18 | 2 |
| 699 | 39.28 | atmosphere | 1010.0 | 4320 | < th | dose independent | rect. | 19 | 22 |
| 706 | 39.29 | atmosphere | 1010.0 | 4320 | < th | dose independent | no | NA | NA |
| 708 | 39.29 | precipitation | 0.1 | 43200 | < th | dose independent | rect. | 17 | 2 |
| 724 | 39.29 | atmosphere | 1010.0 | 4320 | < th | dose independent | rect. | 16 | 23 |
| 727 | 39.29 | precipitation | 0.1 | 43200 | < th | dose dependent | rect. | 17 | 2 |
| 748 | 39.30 | atmosphere | 1010.0 | 4320 | < th | dose independent | rect. | 13 | 23 |
| 772 | 39.32 | atmosphere | 1010.0 | 4320 | > th | dose independent | rect. | 13 | 10 |
| 796 | 39.33 | precipitation | 0.1 | 43200 | > th | dose independent | rect. | 17 | 2 |
| 797 | 39.33 | humidity | 60.0 | 43200 | > th | dose independent | rect. | 15 | 6 |
| 820 | 39.34 | humidity | 80.0 | 43200 | > th | dose independent | rect. | 6 | 1 |
| 860 | 39.35 | precipitation | 0.1 | 43200 | > th | dose dependent | rect. | 12 | 7 |
| 862 | 39.36 | atmosphere | 1010.0 | 14400 | > th | dose independent | rect. | 19 | 1 |
| 864 | 39.36 | humidity | 60.0 | 43200 | < th | dose independent | rect. | 15 | 6 |
| 896 | 39.38 | atmosphere | 1010.0 | 14400 | < th | dose independent | rect. | 19 | 1 |
| 898 | 39.38 | humidity | 60.0 | 43200 | > th | dose independent | rect. | 16 | 3 |
| 911 | 39.38 | humidity | 60.0 | 43200 | > th | dose independent | rect. | 14 | 12 |
| 943 | 39.40 | temperature | 10.0 | 43200 | > th | dose independent | rect. | 10 | 5 |
| 946 | 39.40 | humidity | 60.0 | 43200 | < th | dose independent | rect. | 14 | 12 |
| 978 | 39.41 | humidity | 60.0 | 43200 | > th | dose independent | rect. | 13 | 22 |