Os03g0741400
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Similar to SUSIBA2.
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Os03g0741400 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Similar to SUSIBA2.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = wind,
response mode = > th, dose dependency = dose dependent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 30.4 | 0.259 | 12.2 | 1.43 | 0.347 | 0.484 | 0.49 | 4.62 | 0.228 | 1.17 | 3.897 | 2399 | -- | -- |
| 36.04 | 0.28 | 12.1 | 1.58 | 0.344 | 0.343 | 0.764 | -- | 0.347 | 1.03 | 4.721 | 21534 | -- | -- |
| 31.32 | 0.261 | 12.2 | 1.43 | 0.349 | 0.539 | -- | 5.08 | 0.216 | 1.31 | 3.966 | 2399 | -- | -- |
| 38.55 | 0.289 | 12.1 | 1.55 | 0.354 | 0.341 | -- | -- | 0.342 | 1.44 | 3.723 | 21573 | -- | -- |
| 38.39 | 0.289 | 12.2 | 1.49 | -- | 0.756 | -- | 5.33 | 0.235 | -- | 4.018 | 2399 | -- | -- |
| 36.86 | 0.285 | 12.1 | 1.38 | 0.346 | -- | 0.788 | -- | 0.301 | 1.1 | -- | -- | -- | -- |
| 39.4 | 0.294 | 12.1 | 1.35 | 0.348 | -- | -- | -- | 0.296 | 1.43 | -- | -- | -- | -- |
| 45.35 | 0.315 | 12.1 | 1.3 | -- | -0.26 | -- | -- | 0.298 | -- | 1.014 | 21117 | -- | -- |
| 50.27 | 0.33 | 12.2 | -- | 0.335 | -0.976 | -- | -- | -0.0558 | 1.49 | 6.8 | 47520 | -- | -- |
| 46.84 | 0.32 | 12.1 | 1.36 | -- | -- | -- | -- | 0.303 | -- | -- | -- | -- | -- |
| 87.51 | 0.438 | 12.1 | -- | 0.372 | -- | -- | -- | 0.146 | 1.55 | -- | -- | -- | -- |
| 57.14 | 0.352 | 12.2 | -- | -- | -0.996 | -- | -- | -0.0542 | -- | 6.8 | 47520 | -- | -- |
| 95.98 | 0.457 | 12.1 | -- | -- | -- | -- | -- | 0.152 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 30.32 | temperature | 20.0 | 270 | > th | dose independent | rect. | 3 | 14 |
| 2 | 30.67 | wind | 5.0 | 4320 | > th | dose dependent | rect. | 17 | 4 |
| 4 | 30.70 | wind | 7.0 | 4320 | > th | dose independent | rect. | 17 | 4 |
| 5 | 30.78 | wind | 7.0 | 4320 | < th | dose independent | rect. | 17 | 4 |
| 9 | 30.93 | temperature | 20.0 | 720 | > th | dose independent | rect. | 6 | 1 |
| 15 | 31.06 | atmosphere | 995.0 | 14400 | > th | dose independent | rect. | 10 | 4 |
| 19 | 31.11 | wind | 5.0 | 4320 | > th | dose dependent | rect. | 19 | 2 |
| 20 | 31.14 | wind | 5.0 | 4320 | > th | dose dependent | rect. | 17 | 8 |
| 27 | 31.18 | temperature | 10.0 | 720 | > th | dose dependent | rect. | 6 | 1 |
| 42 | 31.25 | wind | 5.0 | 4320 | > th | dose dependent | rect. | 14 | 11 |
| 43 | 31.25 | wind | 5.0 | 4320 | > th | dose dependent | rect. | 14 | 14 |
| 48 | 31.26 | temperature | 20.0 | 720 | < th | dose independent | rect. | 20 | 13 |
| 57 | 31.28 | wind | 9.0 | 4320 | > th | dose independent | rect. | 17 | 11 |
| 58 | 31.28 | temperature | 20.0 | 270 | > th | dose independent | rect. | 12 | 21 |
| 67 | 31.30 | wind | 7.0 | 4320 | < th | dose independent | rect. | 17 | 8 |
| 71 | 31.30 | wind | 5.0 | 4320 | > th | dose dependent | sin | 14 | NA |
| 87 | 31.33 | wind | 7.0 | 4320 | < th | dose independent | rect. | 14 | 8 |
| 108 | 31.35 | wind | 5.0 | 4320 | > th | dose dependent | rect. | 17 | 1 |
| 123 | 31.37 | wind | 7.0 | 4320 | < th | dose independent | rect. | 14 | 11 |
| 129 | 31.38 | temperature | 20.0 | 720 | > th | dose independent | rect. | 20 | 21 |
| 146 | 31.41 | wind | 7.0 | 4320 | > th | dose independent | rect. | 14 | 7 |
| 152 | 31.41 | temperature | 20.0 | 720 | > th | dose independent | rect. | 21 | 19 |
| 160 | 31.42 | temperature | 20.0 | 720 | < th | dose independent | sin | 10 | NA |
| 179 | 31.45 | temperature | 20.0 | 720 | < th | dose independent | rect. | 23 | 5 |
| 187 | 31.46 | wind | 7.0 | 4320 | > th | dose independent | rect. | 14 | 11 |
| 193 | 31.47 | wind | 5.0 | 4320 | > th | dose independent | rect. | 20 | 1 |
| 199 | 31.48 | wind | 5.0 | 4320 | > th | dose independent | sin | 15 | NA |
| 201 | 31.48 | wind | 5.0 | 4320 | < th | dose independent | rect. | 20 | 1 |
| 213 | 31.49 | humidity | 80.0 | 720 | > th | dose independent | rect. | 6 | 1 |
| 216 | 31.49 | temperature | 20.0 | 720 | > th | dose independent | rect. | 5 | 19 |
| 240 | 31.52 | wind | 7.0 | 4320 | > th | dose independent | rect. | 17 | 1 |
| 256 | 31.54 | wind | 7.0 | 4320 | < th | dose independent | sin | 14 | NA |
| 278 | 31.56 | wind | 7.0 | 4320 | < th | dose independent | rect. | 14 | 19 |
| 338 | 31.62 | wind | 7.0 | 4320 | > th | dose independent | rect. | 14 | 19 |
| 378 | 31.66 | wind | 7.0 | 4320 | < th | dose independent | rect. | 17 | 1 |
| 436 | 31.72 | temperature | 20.0 | 720 | < th | dose independent | rect. | 1 | 2 |
| 462 | 31.74 | temperature | 10.0 | 90 | > th | dose dependent | rect. | 5 | 13 |
| 498 | 31.77 | temperature | 30.0 | 720 | < th | dose dependent | rect. | 1 | 4 |
| 549 | 31.82 | temperature | 10.0 | 270 | > th | dose dependent | rect. | 3 | 14 |
| 563 | 31.84 | wind | 7.0 | 4320 | < th | dose independent | rect. | 14 | 4 |
| 608 | 31.87 | wind | 9.0 | 4320 | > th | dose independent | rect. | 16 | 18 |
| 635 | 31.90 | wind | 7.0 | 4320 | > th | dose independent | rect. | 14 | 4 |
| 645 | 31.90 | wind | 5.0 | 4320 | > th | dose dependent | rect. | 15 | 3 |
| 735 | 31.96 | wind | 5.0 | 4320 | > th | dose dependent | rect. | 15 | 1 |
| 839 | 32.04 | wind | 7.0 | 4320 | < th | dose independent | rect. | 15 | 1 |
| 855 | 32.05 | wind | 1.0 | 270 | > th | dose independent | rect. | 17 | 10 |
| 907 | 32.08 | atmosphere | 995.0 | 90 | > th | dose dependent | rect. | 18 | 11 |
| 908 | 32.09 | precipitation | 0.1 | 14400 | < th | dose independent | rect. | 17 | 1 |
| 917 | 32.09 | precipitation | 0.1 | 14400 | < th | dose dependent | rect. | 17 | 1 |