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Notice!
This gene did NOT pass the analysis criteria (log2(expression) > 5 in more than 80% of samples & normality of residuals was not rejected).
The modeling results may be unreliable.

Os03g0740200

blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II

Description : Conserved hypothetical protein.


log2(Expression) ~ Norm(μ, σ2)

μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8

par. value (S.E.)
α : 4.23 (0.0704) R2 : 0.729
β1 : -2.94 (0.309) R2dD : 0.143 R2D : 0.358
β2 : 1.65 (0.13) R2dC : 0.0978 R2C : 0.0895
β3 : -1.9 (0.196) R2dE : 0.088 R2E : 0.272
β4 : -2.96 (0.522) R2dD*C : 0.0197 R2D*C : 0.0327
β5 : 5.11 (0.867) R2dD*E : 0.0626 R2D*E : 0.258
γ1 : -0.444 (0.139) R2dN8 : 0.0124 R2N8 : 0.00702
σ : 0.995
deviance : 448.17
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_____
C
peak time of C : 9.46
E
wheather : temperature
threshold : 25.1
memory length : 4704
response mode : > th
dose dependency : dose independent
G
type of G : rect.
peak or start time of G : 9.82
open length of G : 2.1

__

Dependence on each variable

Residual plot

Process of the parameter reduction
(fixed parameters. wheather = temperature, response mode = > th, dose dependency = dose independent, type of G = rect.)

deviance σ α β1 β2 β3 β4 β5 γ1 peak time of C threshold memory length peak or start time of G open length of G
448.17 0.995 4.23 -2.94 1.65 -1.9 -2.96 5.11 -0.444 9.46 25.1 4704 9.82 2.1
494.75 1.04 4.39 -3.89 1.64 -1.95 -2.29 -- -0.583 9.11 24.7 7509 10.3 2.35
478.25 1.02 4.25 -3.05 1.65 -2 -- 5.15 -0.49 9.51 25.17 4654 9.91 2.53
513.81 1.06 4.49 -4.16 1.7 -2.07 -- -- -0.701 9.37 25 7500 10.4 2.47
578.04 1.12 4.25 -2.9 -- -2.06 -- 5.03 -0.433 -- 25.3 5233 10.3 3.28
595.84 1.14 4.61 -5.53 1.6 -- -2.95 -- -1.34 8.97 -- -- -- --
625.29 1.17 4.62 -5.63 1.61 -- -- -- -1.34 9.17 -- -- -- --
589.56 1.13 4.49 -3.83 -- -2.79 -- -- -0.577 -- 24.8 5210 10.8 3.63
542.43 1.08 4.23 -- 1.76 -4.91 -- -- 0.365 9.07 21.73 44899 10.8 2.72
774.76 1.3 4.66 -5.63 -- -- -- -- -1.34 -- -- -- -- --
1459.82 1.79 4.47 -- 1.61 -- -- -- -0.718 9.43 -- -- -- --
624.03 1.16 4.23 -- -- -4.91 -- -- 0.389 -- 21.7 33982 11.6 2.87
1611.47 1.87 4.52 -- -- -- -- -- -0.711 -- -- -- -- --

Results of the grid search

Summarized heatmap of deviance
 Histogram

Local optima within top1000 grid-points

rank deviance wheather threshold memory length response mode dose dependency type of G peak or start time of G open length of G
1 460.12 temperature 25 4320 > th dose independent rect. 10 2
3 460.91 temperature 20 4320 < th dose independent rect. 4 1
4 460.93 temperature 20 4320 > th dose independent rect. 4 1
5 461.09 temperature 25 4320 < th dose independent rect. 10 1
21 465.88 radiation 10 43200 < th dose independent rect. 6 1
23 466.03 radiation 1 43200 > th dose dependent rect. 4 3
34 466.21 radiation 10 43200 < th dose independent rect. 24 8
38 466.22 radiation 10 43200 < th dose independent rect. 18 14
40 466.23 radiation 10 43200 < th dose independent rect. 4 4
41 466.23 radiation 10 43200 < th dose independent rect. 2 6
45 466.23 radiation 40 43200 < th dose dependent rect. 24 7
48 466.26 radiation 20 43200 < th dose dependent rect. 24 7
60 466.35 radiation 20 43200 < th dose dependent rect. 5 2
61 466.35 radiation 20 43200 < th dose dependent rect. 2 5
94 466.76 wind 1 43200 > th dose independent rect. 19 9
118 467.62 radiation 10 43200 < th dose independent sin 11 NA
132 467.98 radiation 20 43200 < th dose dependent rect. 18 14
160 468.33 radiation 30 43200 < th dose independent rect. 16 6
165 468.37 radiation 30 43200 < th dose independent rect. 16 8
184 468.49 radiation 30 43200 < th dose independent rect. 16 3
206 468.58 radiation 30 43200 < th dose independent rect. 16 1
245 468.87 radiation 1 43200 > th dose dependent rect. 18 1
318 469.51 radiation 10 43200 < th dose independent rect. 17 8
323 469.52 radiation 10 43200 < th dose independent rect. 17 2
352 469.97 wind 1 43200 > th dose independent rect. 21 7
406 471.03 radiation 1 14400 > th dose independent rect. 9 3
416 471.12 radiation 40 43200 < th dose independent rect. 13 19
436 471.27 temperature 25 4320 > th dose independent rect. 7 11
445 471.40 radiation 30 43200 > th dose dependent rect. 16 16
469 471.54 radiation 40 43200 < th dose independent rect. 13 3
472 471.55 radiation 40 43200 < th dose independent rect. 13 14
474 471.55 radiation 40 43200 < th dose independent rect. 13 17
477 471.56 radiation 40 43200 < th dose independent rect. 13 12
482 471.57 wind 1 43200 < th dose dependent rect. 16 12
489 471.60 radiation 1 14400 < th dose independent rect. 9 3
504 471.73 wind 1 43200 < th dose dependent rect. 19 9
510 471.84 radiation 30 43200 > th dose dependent rect. 7 1
532 471.92 temperature 25 4320 < th dose independent rect. 7 11
536 471.95 radiation 10 43200 < th dose independent rect. 14 13
538 471.96 radiation 10 43200 < th dose independent rect. 14 5
540 471.96 radiation 10 43200 < th dose independent rect. 14 11
565 472.02 wind 1 43200 < th dose independent rect. 19 9
566 472.03 radiation 10 43200 < th dose independent no NA NA
569 472.03 radiation 10 43200 < th dose independent rect. 4 15
571 472.03 radiation 10 43200 < th dose independent rect. 2 17
578 472.03 radiation 10 43200 < th dose independent rect. 4 21
653 472.18 radiation 40 43200 < th dose independent sin 13 NA
766 472.86 temperature 15 43200 < th dose independent rect. 24 1
820 473.10 temperature 15 43200 > th dose independent rect. 23 1
890 473.42 radiation 40 43200 < th dose independent rect. 7 1
894 473.44 temperature 25 4320 > th dose independent sin 23 NA
915 473.51 temperature 20 4320 > th dose dependent rect. 1 2
936 473.54 temperature 20 4320 > th dose dependent rect. 22 14
940 473.56 temperature 20 4320 > th dose dependent rect. 23 4
945 473.57 temperature 20 4320 > th dose dependent rect. 23 11
977 473.65 temperature 20 4320 > th dose dependent rect. 23 9
981 473.66 temperature 20 4320 > th dose dependent sin 8 NA