Os03g0737900
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Conserved hypothetical protein.
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Os03g0737900 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Conserved hypothetical protein.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = temperature,
response mode = < th, dose dependency = dose dependent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 31.52 | 0.264 | 12.1 | 0.377 | 0.404 | -1.41 | -0.721 | 0.803 | 0.282 | 22.8 | 30.66 | 89 | -- | -- |
| 32.43 | 0.265 | 12.1 | 0.46 | 0.381 | -1.44 | -0.589 | -- | 0.314 | 22.7 | 30.55 | 78 | -- | -- |
| 33.61 | 0.27 | 12.1 | 0.392 | 0.426 | -1.43 | -- | 0.662 | 0.274 | 22.8 | 30.41 | 83 | -- | -- |
| 33.52 | 0.27 | 12.1 | 0.503 | 0.421 | -1.47 | -- | -- | 0.301 | 23 | 30.21 | 87 | -- | -- |
| 36.47 | 0.281 | 12.1 | 0.29 | -- | -1.5 | -- | 1.43 | 0.312 | -- | 60.21 | 415 | -- | -- |
| 58.98 | 0.36 | 12 | 0.868 | 0.443 | -- | -0.382 | -- | 0.578 | 18.8 | -- | -- | -- | -- |
| 59.3 | 0.361 | 12 | 0.876 | 0.444 | -- | -- | -- | 0.578 | 18.6 | -- | -- | -- | -- |
| 38.21 | 0.288 | 12 | 0.562 | -- | -1.44 | -- | -- | 0.367 | -- | 43.66 | 396 | -- | -- |
| 40.51 | 0.296 | 12.1 | -- | 0.419 | -1.54 | -- | -- | 0.254 | 22.8 | 29.88 | 90 | -- | -- |
| 69.58 | 0.39 | 12 | 0.865 | -- | -- | -- | -- | 0.569 | -- | -- | -- | -- | -- |
| 79.53 | 0.417 | 12 | -- | 0.433 | -- | -- | -- | 0.48 | 18.7 | -- | -- | -- | -- |
| 43.75 | 0.308 | 12.1 | -- | -- | -1.56 | -- | -- | 0.19 | -- | 28.37 | 408 | -- | -- |
| 89.34 | 0.441 | 12 | -- | -- | -- | -- | -- | 0.472 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 31.56 | temperature | 30 | 90 | < th | dose dependent | no | NA | NA |
| 2 | 31.58 | temperature | 30 | 90 | < th | dose dependent | rect. | 13 | 23 |
| 3 | 31.69 | temperature | 30 | 90 | < th | dose dependent | rect. | 7 | 23 |
| 4 | 31.73 | temperature | 30 | 270 | < th | dose dependent | rect. | 22 | 23 |
| 5 | 31.81 | temperature | 30 | 30 | < th | dose dependent | rect. | 11 | 23 |
| 6 | 31.82 | temperature | 10 | 90 | > th | dose dependent | no | NA | NA |
| 7 | 31.82 | temperature | 30 | 90 | < th | dose dependent | rect. | 15 | 23 |
| 8 | 31.85 | temperature | 30 | 90 | < th | dose dependent | rect. | 9 | 23 |
| 12 | 31.94 | temperature | 15 | 270 | > th | dose dependent | rect. | 17 | 23 |
| 29 | 32.28 | temperature | 30 | 90 | < th | dose dependent | rect. | 17 | 23 |
| 32 | 32.42 | temperature | 30 | 270 | < th | dose dependent | rect. | 24 | 23 |
| 36 | 32.49 | temperature | 15 | 270 | > th | dose dependent | rect. | 3 | 23 |
| 37 | 32.51 | temperature | 15 | 90 | > th | dose dependent | rect. | 1 | 23 |
| 59 | 33.08 | temperature | 30 | 10 | < th | dose dependent | rect. | 3 | 23 |
| 63 | 33.12 | temperature | 15 | 10 | > th | dose dependent | rect. | 6 | 23 |
| 69 | 33.20 | temperature | 15 | 90 | > th | dose dependent | rect. | 5 | 23 |
| 97 | 33.67 | temperature | 30 | 10 | < th | dose dependent | rect. | 23 | 23 |
| 148 | 34.40 | temperature | 15 | 90 | > th | dose dependent | rect. | 21 | 23 |
| 172 | 34.52 | temperature | 30 | 10 | < th | dose dependent | rect. | 1 | 23 |
| 173 | 34.53 | temperature | 15 | 720 | > th | dose dependent | rect. | 21 | 19 |
| 189 | 34.60 | temperature | 15 | 10 | > th | dose dependent | rect. | 21 | 23 |
| 204 | 34.73 | temperature | 15 | 270 | > th | dose dependent | rect. | 23 | 23 |
| 217 | 34.78 | temperature | 15 | 10 | > th | dose dependent | rect. | 23 | 23 |
| 247 | 35.02 | temperature | 30 | 10 | < th | dose dependent | rect. | 5 | 23 |
| 340 | 35.51 | temperature | 15 | 270 | > th | dose dependent | rect. | 9 | 23 |
| 416 | 35.81 | temperature | 15 | 270 | > th | dose dependent | rect. | 12 | 23 |
| 456 | 35.96 | temperature | 25 | 1440 | < th | dose dependent | rect. | 21 | 15 |
| 500 | 36.06 | temperature | 25 | 720 | < th | dose dependent | sin | 11 | NA |
| 538 | 36.19 | temperature | 25 | 1440 | < th | dose dependent | rect. | 1 | 11 |
| 544 | 36.20 | temperature | 25 | 1440 | < th | dose dependent | rect. | 19 | 10 |
| 564 | 36.23 | temperature | 25 | 1440 | < th | dose dependent | rect. | 21 | 8 |
| 578 | 36.26 | temperature | 25 | 1440 | < th | dose dependent | sin | 7 | NA |
| 628 | 36.35 | temperature | 25 | 1440 | < th | dose dependent | rect. | 4 | 1 |
| 672 | 36.42 | temperature | 25 | 1440 | < th | dose dependent | rect. | 1 | 4 |
| 737 | 36.52 | temperature | 10 | 1440 | > th | dose dependent | rect. | 4 | 1 |
| 798 | 36.61 | temperature | 10 | 1440 | > th | dose dependent | rect. | 1 | 4 |
| 822 | 36.65 | temperature | 10 | 720 | > th | dose dependent | sin | 7 | NA |
| 866 | 36.70 | temperature | 25 | 1440 | < th | dose dependent | rect. | 22 | 1 |
| 910 | 36.75 | temperature | 20 | 10 | > th | dose dependent | rect. | 17 | 23 |