Os03g0736200
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Protein prenyltransferase domain containing protein.
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Os03g0736200 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Protein prenyltransferase domain containing protein.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = temperature,
response mode = > th, dose dependency = dose dependent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 50.31 | 0.333 | 7.77 | 1.43 | 0.667 | -0.439 | -1.47 | 4.17 | 0.282 | 20.4 | 22.41 | 603 | -- | -- |
| 57.65 | 0.354 | 7.86 | 0.665 | 0.547 | -0.193 | -0.826 | -- | 0.0662 | 20.8 | 14.64 | 4061 | -- | -- |
| 55.23 | 0.346 | 7.81 | 1.2 | 0.65 | -0.361 | -- | 3.02 | 0.234 | 19.8 | 22.4 | 359 | -- | -- |
| 58.25 | 0.355 | 7.85 | 0.822 | 0.572 | -0.323 | -- | -- | 0.131 | 20.2 | 8.526 | 11297 | -- | -- |
| 72.95 | 0.398 | 7.82 | 0.973 | -- | 0.0996 | -- | 2.93 | 0.0953 | -- | 24.3 | 345 | -- | -- |
| 58.24 | 0.358 | 7.87 | 0.591 | 0.564 | -- | -0.777 | -- | 0.0246 | 20.5 | -- | -- | -- | -- |
| 59.98 | 0.363 | 7.87 | 0.618 | 0.575 | -- | -- | -- | 0.0262 | 20.1 | -- | -- | -- | -- |
| 74.43 | 0.402 | 7.86 | 0.568 | -- | 0.368 | -- | -- | -0.00427 | -- | 24.5 | 512 | -- | -- |
| 64.54 | 0.374 | 7.91 | -- | 0.571 | 0.378 | -- | -- | -0.156 | 20.1 | -17.53 | 47520 | -- | -- |
| 78.14 | 0.413 | 7.86 | 0.613 | -- | -- | -- | -- | 0.0193 | -- | -- | -- | -- | -- |
| 70.05 | 0.392 | 7.89 | -- | 0.571 | -- | -- | -- | -0.0427 | 20.2 | -- | -- | -- | -- |
| 82.03 | 0.422 | 7.88 | -- | -- | 0.451 | -- | -- | -0.0846 | -- | 24.2 | 554 | -- | -- |
| 88.06 | 0.438 | 7.87 | -- | -- | -- | -- | -- | -0.0487 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 49.03 | humidity | 90 | 14400 | < th | dose independent | rect. | 23 | 5 |
| 6 | 49.28 | humidity | 90 | 14400 | > th | dose independent | rect. | 22 | 7 |
| 8 | 49.37 | humidity | 90 | 14400 | < th | dose independent | rect. | 24 | 1 |
| 44 | 50.01 | temperature | 20 | 4320 | > th | dose independent | rect. | 21 | 2 |
| 45 | 50.02 | temperature | 20 | 4320 | < th | dose independent | rect. | 21 | 2 |
| 50 | 50.06 | radiation | 1 | 720 | < th | dose dependent | rect. | 15 | 16 |
| 54 | 50.12 | radiation | 1 | 720 | < th | dose dependent | sin | 13 | NA |
| 56 | 50.15 | wind | 1 | 43200 | > th | dose independent | rect. | 2 | 1 |
| 58 | 50.15 | temperature | 30 | 270 | < th | dose dependent | rect. | 12 | 21 |
| 66 | 50.18 | radiation | 1 | 720 | < th | dose dependent | rect. | 17 | 14 |
| 82 | 50.34 | temperature | 30 | 720 | < th | dose dependent | rect. | 12 | 18 |
| 89 | 50.40 | temperature | 20 | 1440 | > th | dose dependent | rect. | 13 | 16 |
| 99 | 50.42 | temperature | 20 | 720 | > th | dose dependent | rect. | 22 | 20 |
| 121 | 50.48 | temperature | 20 | 1440 | > th | dose dependent | rect. | 17 | 4 |
| 123 | 50.49 | temperature | 20 | 1440 | > th | dose dependent | sin | 15 | NA |
| 133 | 50.51 | wind | 3 | 43200 | < th | dose dependent | rect. | 11 | 1 |
| 147 | 50.54 | temperature | 20 | 1440 | > th | dose dependent | rect. | 16 | 7 |
| 181 | 50.62 | atmosphere | 1005 | 14400 | > th | dose dependent | rect. | 12 | 1 |
| 188 | 50.63 | humidity | 90 | 14400 | > th | dose independent | sin | 11 | NA |
| 203 | 50.65 | humidity | 90 | 14400 | > th | dose dependent | rect. | 24 | 1 |
| 204 | 50.65 | temperature | 30 | 270 | < th | dose dependent | rect. | 12 | 11 |
| 210 | 50.66 | temperature | 20 | 1440 | > th | dose dependent | rect. | 18 | 1 |
| 212 | 50.66 | atmosphere | 1005 | 14400 | > th | dose dependent | rect. | 23 | 1 |
| 221 | 50.67 | temperature | 25 | 720 | < th | dose independent | rect. | 9 | 14 |
| 246 | 50.70 | wind | 1 | 43200 | < th | dose independent | rect. | 2 | 1 |
| 257 | 50.72 | wind | 3 | 43200 | < th | dose independent | rect. | 12 | 1 |
| 263 | 50.72 | radiation | 1 | 720 | < th | dose dependent | rect. | 4 | 20 |
| 289 | 50.77 | temperature | 30 | 720 | < th | dose dependent | sin | 19 | NA |
| 292 | 50.78 | wind | 3 | 43200 | > th | dose independent | rect. | 12 | 2 |
| 293 | 50.78 | wind | 3 | 43200 | < th | dose independent | rect. | 11 | 3 |
| 307 | 50.79 | atmosphere | 1005 | 14400 | > th | dose independent | rect. | 12 | 1 |
| 323 | 50.80 | temperature | 20 | 720 | > th | dose dependent | rect. | 5 | 20 |
| 330 | 50.81 | atmosphere | 1005 | 14400 | > th | dose dependent | rect. | 5 | 19 |
| 345 | 50.83 | humidity | 80 | 43200 | > th | dose independent | rect. | 13 | 6 |
| 355 | 50.83 | atmosphere | 1005 | 14400 | > th | dose dependent | rect. | 8 | 16 |
| 375 | 50.84 | atmosphere | 1010 | 14400 | > th | dose dependent | rect. | 12 | 12 |
| 422 | 50.86 | humidity | 80 | 43200 | > th | dose independent | rect. | 15 | 3 |
| 425 | 50.86 | atmosphere | 1005 | 14400 | > th | dose dependent | sin | 21 | NA |
| 429 | 50.86 | atmosphere | 1005 | 14400 | > th | dose dependent | rect. | 6 | 1 |
| 436 | 50.86 | atmosphere | 1005 | 14400 | > th | dose dependent | rect. | 5 | 13 |
| 447 | 50.86 | temperature | 20 | 720 | > th | dose dependent | rect. | 5 | 18 |
| 452 | 50.86 | atmosphere | 1005 | 14400 | > th | dose dependent | rect. | 12 | 19 |
| 453 | 50.86 | atmosphere | 1005 | 14400 | > th | dose dependent | rect. | 18 | 19 |
| 479 | 50.87 | atmosphere | 1005 | 14400 | > th | dose dependent | sin | 19 | NA |
| 482 | 50.87 | atmosphere | 1005 | 14400 | > th | dose dependent | no | NA | NA |
| 483 | 50.87 | atmosphere | 1005 | 14400 | > th | dose dependent | rect. | 19 | 1 |
| 490 | 50.87 | atmosphere | 1005 | 14400 | > th | dose dependent | rect. | 6 | 8 |
| 507 | 50.87 | atmosphere | 1005 | 14400 | > th | dose dependent | rect. | 19 | 12 |
| 569 | 50.88 | atmosphere | 1005 | 14400 | < th | dose independent | rect. | 12 | 1 |
| 572 | 50.88 | atmosphere | 1005 | 14400 | > th | dose dependent | sin | 12 | NA |
| 592 | 50.88 | atmosphere | 1005 | 14400 | > th | dose dependent | rect. | 9 | 11 |
| 816 | 50.91 | humidity | 80 | 43200 | < th | dose independent | rect. | 14 | 4 |
| 948 | 50.93 | radiation | 1 | 720 | < th | dose dependent | rect. | 17 | 6 |