Os03g0735400
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Non-protein coding transcript, putative npRNA.
FiT-DB / Search/ Help/ Sample detail
|
Os03g0735400 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
|
Description : Non-protein coding transcript, putative npRNA.
|
|
log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
|
_____ |
|
__
Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = radiation,
response mode = > th, dose dependency = dose independent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 71.11 | 0.396 | 7.97 | -0.298 | 0.351 | 0.656 | 1.13 | -0.00561 | -0.0928 | 20.1 | 16.12 | 10 | -- | -- |
| 71.11 | 0.393 | 7.97 | -0.298 | 0.351 | 0.656 | 1.14 | -- | -0.0929 | 20.1 | 16.12 | 10 | -- | -- |
| 74.56 | 0.402 | 7.98 | -0.269 | 0.333 | 0.64 | -- | -0.266 | -0.087 | 19.6 | 16.56 | 12 | -- | -- |
| 75.02 | 0.403 | 7.97 | -0.329 | 0.35 | 0.644 | -- | -- | -0.0998 | 19.9 | 16.11 | 10 | -- | -- |
| 79.77 | 0.416 | 7.97 | -0.291 | -- | 0.547 | -- | -0.425 | -0.0954 | -- | 16.94 | 9 | -- | -- |
| 89.22 | 0.443 | 7.96 | -0.282 | 0.534 | -- | -0.0532 | -- | -0.101 | 14.6 | -- | -- | -- | -- |
| 89.23 | 0.442 | 7.96 | -0.283 | 0.535 | -- | -- | -- | -0.101 | 14.6 | -- | -- | -- | -- |
| 80.7 | 0.418 | 7.96 | -0.325 | -- | 0.54 | -- | -- | -0.099 | -- | 16.94 | 9 | -- | -- |
| 77.91 | 0.411 | 7.96 | -- | 0.337 | 0.615 | -- | -- | -0.0593 | 19.5 | 16.94 | 10 | -- | -- |
| 105.97 | 0.481 | 7.97 | -0.306 | -- | -- | -- | -- | -0.115 | -- | -- | -- | -- | -- |
| 91.34 | 0.447 | 7.96 | -- | 0.54 | -- | -- | -- | -0.0696 | 14.6 | -- | -- | -- | -- |
| 83.48 | 0.426 | 7.96 | -- | -- | 0.537 | -- | -- | -0.0631 | -- | 16.93 | 9 | -- | -- |
| 108.44 | 0.486 | 7.96 | -- | -- | -- | -- | -- | -0.0807 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
|
Histogram 
|
Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 58.98 | temperature | 10.0 | 270 | > th | dose dependent | rect. | 19 | 16 |
| 3 | 59.52 | temperature | 10.0 | 270 | > th | dose dependent | rect. | 17 | 9 |
| 6 | 60.76 | temperature | 10.0 | 270 | > th | dose dependent | rect. | 6 | 5 |
| 7 | 60.79 | temperature | 30.0 | 270 | < th | dose dependent | rect. | 1 | 5 |
| 9 | 61.05 | temperature | 10.0 | 90 | > th | dose dependent | rect. | 8 | 18 |
| 14 | 61.33 | wind | 1.0 | 270 | > th | dose independent | rect. | 11 | 19 |
| 16 | 61.38 | wind | 1.0 | 270 | > th | dose independent | rect. | 1 | 5 |
| 17 | 61.42 | temperature | 30.0 | 270 | < th | dose dependent | rect. | 2 | 3 |
| 19 | 61.45 | temperature | 15.0 | 270 | > th | dose independent | rect. | 6 | 5 |
| 23 | 61.50 | temperature | 10.0 | 10 | > th | dose dependent | rect. | 8 | 19 |
| 24 | 61.55 | wind | 7.0 | 270 | < th | dose independent | rect. | 6 | 6 |
| 25 | 61.58 | radiation | 1.0 | 270 | > th | dose independent | rect. | 6 | 5 |
| 26 | 61.66 | temperature | 30.0 | 270 | < th | dose dependent | rect. | 23 | 7 |
| 30 | 61.81 | atmosphere | 995.0 | 270 | > th | dose independent | rect. | 12 | 18 |
| 31 | 61.81 | wind | 9.0 | 270 | < th | dose dependent | rect. | 6 | 6 |
| 35 | 62.03 | precipitation | 0.1 | 270 | < th | dose independent | rect. | 6 | 5 |
| 36 | 62.03 | precipitation | 0.1 | 270 | < th | dose dependent | rect. | 6 | 5 |
| 37 | 62.04 | wind | 9.0 | 270 | < th | dose dependent | rect. | 7 | 4 |
| 38 | 62.05 | humidity | 50.0 | 270 | > th | dose independent | rect. | 6 | 5 |
| 40 | 62.08 | radiation | 1.0 | 270 | > th | dose independent | rect. | 7 | 3 |
| 44 | 62.16 | atmosphere | 995.0 | 270 | > th | dose independent | rect. | 6 | 5 |
| 45 | 62.16 | atmosphere | 1015.0 | 270 | < th | dose independent | rect. | 6 | 5 |
| 46 | 62.16 | temperature | 10.0 | 270 | > th | dose independent | rect. | 11 | 19 |
| 66 | 62.48 | temperature | 20.0 | 270 | > th | dose independent | rect. | 6 | 19 |
| 67 | 62.49 | precipitation | 0.1 | 270 | < th | dose independent | rect. | 11 | 19 |
| 68 | 62.49 | precipitation | 0.1 | 270 | < th | dose dependent | rect. | 11 | 19 |
| 81 | 62.74 | radiation | 1.0 | 270 | > th | dose independent | rect. | 18 | 18 |
| 91 | 62.89 | precipitation | 0.1 | 270 | < th | dose independent | rect. | 7 | 3 |
| 92 | 62.89 | precipitation | 0.1 | 270 | < th | dose dependent | rect. | 7 | 3 |
| 113 | 62.99 | wind | 9.0 | 270 | < th | dose independent | rect. | 11 | 19 |
| 117 | 63.02 | atmosphere | 995.0 | 270 | > th | dose independent | rect. | 7 | 3 |
| 118 | 63.02 | atmosphere | 1015.0 | 270 | < th | dose independent | rect. | 7 | 3 |
| 120 | 63.02 | temperature | 10.0 | 270 | > th | dose independent | rect. | 10 | 21 |
| 124 | 63.05 | radiation | 40.0 | 90 | < th | dose independent | rect. | 13 | 18 |
| 133 | 63.14 | temperature | 20.0 | 90 | > th | dose independent | rect. | 8 | 19 |
| 136 | 63.18 | radiation | 1.0 | 270 | > th | dose independent | rect. | 17 | 20 |
| 145 | 63.32 | wind | 9.0 | 270 | < th | dose independent | rect. | 6 | 19 |
| 151 | 63.38 | radiation | 10.0 | 270 | < th | dose dependent | rect. | 1 | 6 |
| 168 | 63.61 | precipitation | 0.1 | 270 | < th | dose independent | rect. | 1 | 5 |
| 173 | 63.61 | precipitation | 0.1 | 270 | < th | dose dependent | rect. | 1 | 5 |
| 174 | 63.62 | radiation | 10.0 | 270 | < th | dose independent | rect. | 1 | 6 |
| 179 | 63.75 | radiation | 10.0 | 270 | < th | dose dependent | rect. | 2 | 4 |
| 181 | 63.76 | atmosphere | 1010.0 | 270 | < th | dose independent | rect. | 1 | 5 |
| 183 | 63.78 | atmosphere | 1015.0 | 270 | < th | dose independent | rect. | 6 | 19 |
| 192 | 63.83 | wind | 9.0 | 270 | < th | dose independent | rect. | 1 | 5 |
| 193 | 63.83 | temperature | 10.0 | 270 | > th | dose independent | rect. | 1 | 5 |
| 195 | 63.83 | temperature | 30.0 | 270 | < th | dose independent | rect. | 1 | 5 |
| 196 | 63.83 | humidity | 50.0 | 270 | > th | dose independent | rect. | 1 | 5 |
| 199 | 63.83 | atmosphere | 995.0 | 270 | > th | dose independent | rect. | 1 | 5 |
| 208 | 63.89 | radiation | 1.0 | 270 | < th | dose independent | rect. | 2 | 4 |
| 247 | 64.05 | radiation | 1.0 | 270 | < th | dose independent | rect. | 2 | 10 |
| 252 | 64.08 | temperature | 20.0 | 270 | > th | dose independent | rect. | 17 | 8 |
| 260 | 64.12 | precipitation | 0.1 | 270 | < th | dose independent | rect. | 6 | 19 |
| 261 | 64.12 | precipitation | 0.1 | 270 | < th | dose dependent | rect. | 6 | 19 |
| 273 | 64.22 | radiation | 1.0 | 270 | < th | dose independent | sin | 5 | NA |
| 279 | 64.27 | radiation | 1.0 | 270 | < th | dose dependent | rect. | 2 | 10 |
| 281 | 64.28 | radiation | 40.0 | 10 | < th | dose independent | rect. | 12 | 20 |
| 283 | 64.28 | radiation | 40.0 | 10 | < th | dose dependent | rect. | 13 | 20 |
| 299 | 64.39 | radiation | 1.0 | 270 | > th | dose independent | sin | 5 | NA |
| 327 | 64.49 | wind | 1.0 | 270 | > th | dose independent | rect. | 7 | 3 |
| 335 | 64.55 | atmosphere | 995.0 | 270 | > th | dose independent | rect. | 2 | 15 |
| 364 | 64.74 | wind | 9.0 | 270 | < th | dose independent | rect. | 16 | 10 |
| 368 | 64.76 | temperature | 15.0 | 10 | > th | dose dependent | rect. | 21 | 16 |
| 370 | 64.78 | radiation | 10.0 | 270 | < th | dose dependent | sin | 6 | NA |
| 377 | 64.80 | precipitation | 0.1 | 270 | < th | dose independent | rect. | 2 | 15 |
| 378 | 64.80 | precipitation | 0.1 | 270 | < th | dose dependent | rect. | 2 | 15 |
| 435 | 65.01 | humidity | 90.0 | 270 | < th | dose independent | rect. | 7 | 4 |
| 436 | 65.02 | temperature | 10.0 | 270 | > th | dose independent | rect. | 17 | 9 |
| 437 | 65.02 | radiation | 20.0 | 270 | < th | dose independent | rect. | 17 | 9 |
| 440 | 65.02 | temperature | 10.0 | 270 | > th | dose independent | rect. | 2 | 15 |
| 441 | 65.02 | atmosphere | 1015.0 | 270 | < th | dose independent | rect. | 2 | 15 |
| 443 | 65.03 | radiation | 1.0 | 270 | < th | dose dependent | sin | 4 | NA |
| 449 | 65.05 | temperature | 20.0 | 10 | > th | dose independent | rect. | 8 | 19 |
| 479 | 65.23 | temperature | 20.0 | 10 | > th | dose independent | rect. | 9 | 17 |
| 576 | 65.47 | humidity | 90.0 | 90 | < th | dose independent | rect. | 7 | 6 |
| 640 | 65.64 | temperature | 10.0 | 10 | > th | dose dependent | rect. | 8 | 5 |
| 673 | 65.74 | precipitation | 0.1 | 270 | < th | dose independent | rect. | 17 | 9 |
| 677 | 65.74 | precipitation | 0.1 | 270 | < th | dose dependent | rect. | 17 | 9 |
| 701 | 65.84 | radiation | 40.0 | 270 | < th | dose dependent | rect. | 17 | 9 |
| 732 | 65.95 | humidity | 90.0 | 10 | < th | dose independent | rect. | 8 | 7 |
| 838 | 66.19 | wind | 9.0 | 270 | < th | dose independent | rect. | 2 | 15 |
| 840 | 66.20 | temperature | 30.0 | 270 | < th | dose independent | rect. | 7 | 3 |
| 852 | 66.22 | radiation | 20.0 | 10 | < th | dose dependent | sin | 3 | NA |
| 877 | 66.27 | humidity | 50.0 | 270 | > th | dose independent | rect. | 17 | 9 |
| 927 | 66.35 | wind | 9.0 | 270 | < th | dose dependent | rect. | 6 | 19 |
| 933 | 66.38 | temperature | 20.0 | 90 | > th | dose independent | rect. | 21 | 16 |
| 939 | 66.39 | humidity | 50.0 | 270 | > th | dose dependent | rect. | 1 | 5 |
| 990 | 66.48 | wind | 9.0 | 10 | < th | dose independent | rect. | 9 | 17 |
| 992 | 66.48 | temperature | 20.0 | 270 | > th | dose independent | rect. | 18 | 17 |