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Os03g0735100

blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II

Description : Cytochrome cd1-nitrite reductase-like, C-terminal haem d1 domain containing protein.


log2(Expression) ~ Norm(μ, σ2)

μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8

par. value (S.E.)
α : 11.7 (0.0185) R2 : 0.273
β1 : -- (--) R2dD : -- R2D : --
β2 : 0.614 (0.0471) R2dC : 0.272 R2C : 0.272
β3 : -- (--) R2dE : -- R2E : --
β4 : -- (--) R2dD*C : -- R2D*C : --
β5 : -- (--) R2dD*E : -- R2D*E : --
γ1 : -0.0212 (0.039) R2dN8 : 0.000609 R2N8 : 9e-04
σ : 0.349
deviance : 55.73
__
_____
C
peak time of C : 15.8
E
wheather : --
threshold : --
memory length : --
response mode : --
dose dependency : --
G
type of G : --
peak or start time of G : --
open length of G : --

__

Dependence on each variable

Residual plot

Process of the parameter reduction
(fixed parameters. wheather = atmosphere, response mode = > th, dose dependency = dose dependent, type of G = no)

deviance σ α β1 β2 β3 β4 β5 γ1 peak time of C threshold memory length peak or start time of G open length of G
40.99 0.301 11.7 0.678 0.605 0.869 0.716 0.523 0.0933 15.9 1016 4437 -- --
41.17 0.299 11.7 0.704 0.604 0.692 0.732 -- 0.0956 15.9 1016 4438 -- --
42.46 0.303 11.7 0.672 0.608 0.862 -- 0.659 0.0918 15.8 1016 4468 -- --
42.67 0.304 11.7 0.718 0.603 0.633 -- -- 0.104 15.8 1016 4493 -- --
62.59 0.368 11.7 0.641 -- 1.26 -- 1.16 0.0659 -- 1016 4096 -- --
45.53 0.316 11.7 0.583 0.623 -- 0.578 -- 0.0414 15.9 -- -- -- --
46.51 0.319 11.7 0.591 0.626 -- -- -- 0.0447 15.8 -- -- -- --
62.99 0.37 11.7 0.696 -- 0.737 -- -- 0.0925 -- 1016 4398 -- --
54.34 0.343 11.7 -- 0.607 0.502 -- -- -0.00714 15.9 1016 3988 -- --
68.07 0.386 11.7 0.565 -- -- -- -- 0.028 -- -- -- -- --
55.73 0.349 11.7 -- 0.614 -- -- -- -0.0212 15.8 -- -- -- --
74.21 0.401 11.7 -- -- 0.561 -- -- -0.0106 -- 1016 4008 -- --
76.51 0.408 11.7 -- -- -- -- -- -0.0347 -- -- -- -- --

Results of the grid search

Summarized heatmap of deviance
 Histogram

Local optima within top1000 grid-points

rank deviance wheather threshold memory length response mode dose dependency type of G peak or start time of G open length of G
1 36.09 temperature 15.0 270 > th dose independent rect. 10 22
4 36.40 temperature 15.0 10 > th dose independent rect. 14 19
5 36.44 temperature 10.0 10 > th dose dependent rect. 14 19
6 36.47 wind 5.0 10 < th dose independent rect. 3 6
7 36.50 wind 5.0 90 < th dose independent rect. 3 5
9 36.51 wind 9.0 10 < th dose dependent rect. 3 6
12 36.61 temperature 15.0 270 > th dose independent rect. 11 19
13 36.62 precipitation 0.1 10 < th dose independent rect. 3 6
16 36.62 precipitation 0.1 10 < th dose dependent rect. 3 6
21 36.75 temperature 10.0 10 > th dose dependent rect. 3 6
24 36.78 atmosphere 995.0 10 > th dose independent rect. 9 18
28 36.80 temperature 15.0 270 > th dose independent rect. 13 16
34 36.86 temperature 10.0 10 > th dose independent rect. 3 6
36 36.86 temperature 30.0 10 < th dose independent rect. 3 6
37 36.86 humidity 50.0 10 > th dose independent rect. 3 6
39 36.86 atmosphere 995.0 10 > th dose independent rect. 3 6
40 36.86 atmosphere 1015.0 10 < th dose independent rect. 3 6
41 36.86 temperature 10.0 10 > th dose independent rect. 9 18
55 36.93 wind 5.0 270 < th dose independent rect. 3 2
58 36.96 radiation 40.0 30 < th dose independent rect. 3 6
59 36.96 wind 9.0 10 < th dose independent rect. 9 18
75 37.06 radiation 40.0 10 < th dose independent rect. 12 21
78 37.10 humidity 50.0 270 > th dose independent rect. 9 1
83 37.15 precipitation 0.1 10 < th dose independent rect. 9 18
84 37.15 atmosphere 995.0 30 > th dose dependent rect. 9 18
85 37.15 precipitation 0.1 10 < th dose dependent rect. 9 18
86 37.17 precipitation 0.1 270 < th dose independent rect. 3 2
88 37.17 precipitation 0.1 10 < th dose independent rect. 14 19
89 37.17 precipitation 0.1 270 < th dose dependent rect. 3 2
91 37.17 precipitation 0.1 10 < th dose dependent rect. 14 19
92 37.19 precipitation 0.1 270 < th dose independent rect. 10 22
93 37.19 precipitation 0.1 270 < th dose dependent rect. 10 22
95 37.21 temperature 10.0 270 > th dose independent rect. 9 1
96 37.21 atmosphere 995.0 270 > th dose independent rect. 9 1
97 37.21 atmosphere 1015.0 270 < th dose independent rect. 9 1
103 37.22 humidity 50.0 30 > th dose independent rect. 9 18
105 37.24 precipitation 0.1 270 < th dose independent rect. 9 1
107 37.24 precipitation 0.1 270 < th dose dependent rect. 9 1
108 37.25 wind 9.0 270 < th dose independent rect. 9 1
112 37.26 wind 5.0 270 < th dose independent rect. 23 8
120 37.30 temperature 10.0 270 > th dose dependent rect. 9 1
121 37.30 temperature 10.0 270 > th dose dependent rect. 11 20
126 37.32 atmosphere 1015.0 10 < th dose independent rect. 14 19
131 37.34 wind 1.0 270 > th dose independent rect. 9 1
132 37.34 wind 9.0 270 < th dose independent rect. 5 22
133 37.34 temperature 10.0 270 > th dose dependent rect. 3 2
134 37.35 temperature 10.0 10 > th dose independent rect. 9 5
136 37.35 atmosphere 995.0 10 > th dose independent rect. 9 5
137 37.35 atmosphere 1015.0 10 < th dose independent rect. 9 5
138 37.35 precipitation 0.1 10 < th dose independent rect. 9 5
140 37.35 precipitation 0.1 10 < th dose dependent rect. 9 5
141 37.36 temperature 15.0 270 > th dose independent rect. 10 9
147 37.38 radiation 1.0 270 < th dose dependent rect. 3 2
149 37.39 temperature 10.0 270 > th dose independent rect. 3 2
151 37.39 temperature 30.0 270 < th dose independent rect. 3 2
152 37.39 humidity 50.0 270 > th dose independent rect. 3 2
155 37.39 atmosphere 995.0 270 > th dose independent rect. 3 2
156 37.39 atmosphere 1010.0 270 < th dose independent rect. 3 2
158 37.39 radiation 1.0 270 < th dose independent rect. 3 2
163 37.39 wind 1.0 30 > th dose independent rect. 9 5
164 37.39 radiation 1.0 10 > th dose independent rect. 9 5
165 37.39 atmosphere 1000.0 90 > th dose independent rect. 19 8
166 37.39 temperature 10.0 270 > th dose independent rect. 5 22
186 37.47 precipitation 0.1 270 < th dose independent rect. 12 18
187 37.47 precipitation 0.1 270 < th dose dependent rect. 12 18
196 37.50 precipitation 0.1 270 < th dose independent rect. 13 16
199 37.50 precipitation 0.1 270 < th dose dependent rect. 13 16
200 37.51 humidity 50.0 90 > th dose dependent rect. 18 9
210 37.54 radiation 40.0 90 < th dose dependent rect. 3 6
212 37.55 wind 9.0 10 < th dose independent rect. 14 19
216 37.56 wind 9.0 270 < th dose dependent rect. 3 2
224 37.60 wind 9.0 10 < th dose independent rect. 9 5
225 37.60 temperature 10.0 1440 > th dose independent rect. 10 5
228 37.60 temperature 10.0 1440 > th dose independent rect. 15 19
231 37.60 radiation 40.0 90 < th dose independent rect. 13 19
243 37.63 humidity 50.0 270 > th dose independent rect. 6 6
261 37.67 humidity 50.0 10 > th dose independent rect. 9 5
273 37.69 humidity 50.0 90 > th dose dependent rect. 8 19
294 37.72 temperature 10.0 1440 > th dose independent rect. 4 6
297 37.72 atmosphere 995.0 1440 > th dose independent rect. 4 6
298 37.72 atmosphere 1015.0 1440 < th dose independent rect. 4 6
299 37.72 temperature 15.0 270 > th dose independent rect. 2 15
300 37.72 temperature 10.0 1440 > th dose independent rect. 10 18
321 37.74 radiation 1.0 270 < th dose dependent rect. 5 21
333 37.75 atmosphere 1000.0 270 > th dose independent rect. 17 8
337 37.75 radiation 1.0 270 > th dose dependent rect. 8 2
342 37.75 humidity 50.0 270 > th dose dependent rect. 6 19
358 37.81 atmosphere 1010.0 270 < th dose independent rect. 11 8
359 37.81 radiation 40.0 90 < th dose independent rect. 3 16
362 37.82 temperature 10.0 270 > th dose independent rect. 6 6
363 37.82 atmosphere 995.0 270 > th dose independent rect. 6 6
364 37.82 atmosphere 1015.0 270 < th dose independent rect. 6 6
365 37.82 humidity 50.0 270 > th dose independent rect. 19 16
368 37.83 radiation 1.0 270 > th dose independent rect. 9 1
370 37.83 temperature 10.0 270 > th dose independent rect. 5 8
371 37.83 atmosphere 995.0 270 > th dose independent rect. 5 8
372 37.83 atmosphere 1015.0 270 < th dose independent rect. 5 8
381 37.84 precipitation 0.1 270 < th dose independent rect. 6 6
383 37.84 precipitation 0.1 270 < th dose dependent rect. 6 6
412 37.86 atmosphere 1015.0 30 < th dose dependent rect. 14 19
413 37.87 wind 1.0 270 > th dose independent rect. 3 1
414 37.87 precipitation 0.1 270 < th dose independent rect. 5 8
418 37.87 precipitation 0.1 270 < th dose dependent rect. 5 8
452 37.90 wind 9.0 270 < th dose independent rect. 6 5
472 37.91 temperature 10.0 270 > th dose independent rect. 19 16
473 37.91 atmosphere 995.0 270 > th dose independent rect. 19 16
475 37.92 wind 9.0 270 < th dose independent rect. 5 8
477 37.92 precipitation 0.1 270 < th dose independent rect. 11 8
479 37.92 precipitation 0.1 270 < th dose dependent rect. 11 8
480 37.92 humidity 50.0 270 > th dose dependent rect. 5 21
502 37.94 wind 9.0 270 < th dose independent rect. 10 21
503 37.94 humidity 50.0 270 > th dose dependent rect. 3 2
525 37.96 temperature 15.0 270 > th dose independent rect. 23 8
530 37.96 radiation 30.0 270 < th dose dependent rect. 16 10
540 37.98 radiation 40.0 10 < th dose independent rect. 3 16
541 37.98 radiation 40.0 10 < th dose dependent rect. 3 6
545 37.99 humidity 90.0 270 < th dose independent rect. 11 8
561 38.00 atmosphere 995.0 90 > th dose dependent rect. 19 8
565 38.01 wind 9.0 270 < th dose independent rect. 19 16
567 38.01 wind 9.0 270 < th dose independent rect. 6 19
570 38.02 radiation 10.0 270 < th dose independent rect. 1 5
573 38.02 precipitation 0.1 270 < th dose independent rect. 2 15
575 38.02 atmosphere 995.0 270 > th dose independent rect. 5 21
576 38.02 precipitation 0.1 270 < th dose dependent rect. 2 15
591 38.04 temperature 10.0 270 > th dose dependent rect. 23 8
602 38.06 radiation 1.0 270 < th dose independent rect. 5 21
603 38.06 radiation 10.0 270 < th dose dependent rect. 1 5
622 38.08 wind 9.0 270 < th dose independent rect. 13 16
626 38.08 atmosphere 995.0 10 > th dose dependent rect. 3 6
646 38.10 temperature 10.0 270 > th dose independent rect. 6 19
648 38.10 humidity 50.0 90 > th dose dependent rect. 3 5
657 38.11 temperature 10.0 10 > th dose dependent rect. 9 5
660 38.12 wind 1.0 270 > th dose independent rect. 11 8
661 38.12 precipitation 0.1 270 < th dose independent rect. 23 8
663 38.12 atmosphere 995.0 270 > th dose independent rect. 6 19
664 38.12 atmosphere 1015.0 270 < th dose independent rect. 10 21
665 38.12 precipitation 0.1 270 < th dose dependent rect. 23 8
678 38.13 radiation 1.0 270 > th dose independent rect. 11 19
680 38.13 temperature 10.0 270 > th dose dependent rect. 11 8
687 38.14 wind 9.0 270 < th dose dependent rect. 7 3
708 38.16 radiation 10.0 270 < th dose independent rect. 17 9
716 38.17 wind 9.0 270 < th dose independent rect. 11 8
719 38.17 radiation 1.0 270 < th dose independent rect. 6 19
758 38.21 radiation 10.0 270 < th dose independent rect. 23 8
759 38.21 wind 9.0 270 < th dose independent rect. 17 9
786 38.24 radiation 30.0 270 < th dose dependent rect. 23 8
792 38.25 atmosphere 995.0 10 > th dose independent rect. 14 19
794 38.25 temperature 10.0 90 > th dose dependent rect. 8 5
800 38.26 atmosphere 1015.0 270 < th dose independent rect. 23 8
816 38.28 temperature 10.0 270 > th dose independent rect. 17 9
817 38.28 humidity 50.0 270 > th dose independent rect. 17 9
822 38.28 atmosphere 1015.0 270 < th dose independent rect. 2 15
842 38.30 wind 9.0 270 < th dose independent rect. 7 16
867 38.32 humidity 70.0 270 > th dose independent rect. 23 8
878 38.33 radiation 1.0 270 < th dose independent rect. 8 17
895 38.34 temperature 30.0 270 < th dose independent rect. 23 8
896 38.34 humidity 50.0 270 > th dose independent rect. 23 8
898 38.34 atmosphere 995.0 270 > th dose independent rect. 23 8
901 38.34 temperature 10.0 270 > th dose independent rect. 7 16
940 38.36 radiation 1.0 90 < th dose dependent rect. 8 19
942 38.37 wind 7.0 90 < th dose independent rect. 19 8
993 38.40 radiation 1.0 90 < th dose dependent rect. 12 15