Os03g0732800
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Homeodomain-like containing protein.
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Os03g0732800 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Homeodomain-like containing protein.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = temperature,
response mode = > th, dose dependency = dose independent, type of G = sin)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 129.64 | 0.535 | 6.68 | -0.389 | 0.115 | -1.41 | -0.726 | 1.02 | -0.0818 | 14.4 | 21.6 | 3436 | 4 | -- |
| 133.75 | 0.539 | 6.69 | -0.567 | 0.192 | -1.39 | -0.981 | -- | -0.0726 | 15 | 21.51 | 3549 | 4.01 | -- |
| 130.44 | 0.532 | 6.68 | -0.402 | 0.216 | -1.46 | -- | 0.979 | -0.086 | 11.9 | 21.54 | 3489 | 3.12 | -- |
| 125.96 | 0.523 | 6.76 | -0.887 | 0.317 | -1.44 | -- | -- | -0.293 | 11.9 | 21.5 | 2141 | 2.78 | -- |
| 132.21 | 0.536 | 6.69 | -0.433 | -- | -1.44 | -- | 0.942 | -0.101 | -- | 21.6 | 3433 | 4.38 | -- |
| 204.25 | 0.67 | 6.85 | -1.47 | 0.292 | -- | -0.864 | -- | -0.741 | 15.7 | -- | -- | -- | -- |
| 206.49 | 0.673 | 6.86 | -1.48 | 0.286 | -- | -- | -- | -0.746 | 15.6 | -- | -- | -- | -- |
| 129.66 | 0.53 | 6.75 | -0.945 | -- | -1.38 | -- | -- | -0.299 | -- | 21.5 | 1877 | 3.74 | -- |
| 143.64 | 0.558 | 6.71 | -- | 0.228 | -1.77 | -- | -- | -0.0369 | 11.4 | 21.3 | 3418 | 2.3 | -- |
| 211.05 | 0.679 | 6.86 | -1.49 | -- | -- | -- | -- | -0.753 | -- | -- | -- | -- | -- |
| 264.37 | 0.761 | 6.82 | -- | 0.315 | -- | -- | -- | -0.581 | 15.6 | -- | -- | -- | -- |
| 146.51 | 0.564 | 6.7 | -- | -- | -1.71 | -- | -- | -0.0475 | -- | 21.2 | 3320 | 3.25 | -- |
| 269.92 | 0.767 | 6.82 | -- | -- | -- | -- | -- | -0.588 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 131.41 | temperature | 20 | 720 | > th | dose dependent | rect. | 21 | 12 |
| 8 | 134.23 | temperature | 20 | 1440 | > th | dose dependent | rect. | 24 | 5 |
| 11 | 134.34 | temperature | 20 | 1440 | > th | dose dependent | rect. | 1 | 2 |
| 17 | 134.72 | temperature | 20 | 720 | > th | dose dependent | sin | 9 | NA |
| 19 | 134.78 | temperature | 20 | 1440 | < th | dose independent | rect. | 4 | 2 |
| 25 | 135.19 | temperature | 25 | 720 | < th | dose dependent | rect. | 21 | 10 |
| 29 | 135.47 | temperature | 30 | 1440 | < th | dose dependent | rect. | 4 | 1 |
| 37 | 135.90 | temperature | 15 | 1440 | > th | dose dependent | rect. | 4 | 1 |
| 52 | 136.10 | temperature | 25 | 720 | < th | dose dependent | sin | 10 | NA |
| 59 | 136.24 | temperature | 20 | 1440 | > th | dose independent | rect. | 5 | 1 |
| 73 | 136.70 | temperature | 25 | 720 | < th | dose dependent | rect. | 23 | 6 |
| 276 | 139.77 | temperature | 20 | 4320 | > th | dose independent | rect. | 22 | 1 |
| 279 | 139.82 | humidity | 90 | 43200 | > th | dose dependent | rect. | 5 | 1 |
| 325 | 140.33 | radiation | 1 | 43200 | > th | dose independent | rect. | 10 | 1 |
| 326 | 140.33 | radiation | 1 | 43200 | < th | dose independent | rect. | 10 | 1 |
| 327 | 140.33 | radiation | 1 | 43200 | < th | dose dependent | rect. | 10 | 1 |
| 358 | 140.70 | humidity | 90 | 43200 | > th | dose independent | rect. | 5 | 1 |
| 385 | 140.96 | atmosphere | 1015 | 43200 | < th | dose independent | rect. | 18 | 2 |
| 386 | 140.96 | atmosphere | 1015 | 43200 | < th | dose independent | rect. | 14 | 6 |
| 388 | 140.97 | wind | 7 | 43200 | > th | dose dependent | rect. | 11 | 1 |
| 394 | 141.05 | humidity | 90 | 43200 | > th | dose dependent | rect. | 4 | 3 |
| 400 | 141.14 | atmosphere | 1015 | 43200 | > th | dose independent | rect. | 13 | 7 |
| 413 | 141.23 | radiation | 1 | 43200 | < th | dose dependent | rect. | 8 | 4 |
| 450 | 141.54 | atmosphere | 1015 | 43200 | < th | dose independent | rect. | 14 | 4 |
| 490 | 141.90 | temperature | 20 | 4320 | < th | dose independent | rect. | 22 | 1 |
| 497 | 141.94 | radiation | 1 | 43200 | > th | dose independent | rect. | 8 | 3 |
| 499 | 141.97 | radiation | 1 | 43200 | < th | dose independent | rect. | 8 | 3 |
| 508 | 142.00 | radiation | 1 | 43200 | < th | dose independent | rect. | 8 | 1 |
| 510 | 142.01 | wind | 7 | 43200 | > th | dose independent | rect. | 11 | 1 |
| 511 | 142.01 | radiation | 1 | 43200 | > th | dose independent | rect. | 8 | 1 |
| 525 | 142.08 | humidity | 90 | 43200 | > th | dose dependent | rect. | 1 | 13 |
| 534 | 142.15 | atmosphere | 1015 | 43200 | > th | dose dependent | rect. | 13 | 1 |
| 536 | 142.16 | humidity | 90 | 43200 | > th | dose dependent | rect. | 3 | 5 |
| 548 | 142.29 | temperature | 15 | 43200 | < th | dose independent | rect. | 10 | 1 |
| 549 | 142.29 | temperature | 15 | 43200 | > th | dose independent | rect. | 10 | 2 |
| 559 | 142.34 | wind | 7 | 43200 | < th | dose independent | rect. | 11 | 1 |
| 562 | 142.35 | atmosphere | 1015 | 43200 | > th | dose independent | rect. | 14 | 1 |
| 580 | 142.41 | radiation | 10 | 43200 | < th | dose independent | rect. | 12 | 1 |
| 590 | 142.44 | radiation | 40 | 43200 | < th | dose independent | rect. | 3 | 5 |
| 603 | 142.51 | radiation | 40 | 43200 | < th | dose independent | rect. | 17 | 15 |
| 608 | 142.54 | humidity | 90 | 43200 | > th | dose dependent | sin | 5 | NA |
| 614 | 142.56 | atmosphere | 1015 | 43200 | > th | dose dependent | rect. | 12 | 4 |
| 616 | 142.58 | humidity | 60 | 43200 | < th | dose dependent | rect. | 11 | 3 |
| 617 | 142.59 | radiation | 30 | 43200 | < th | dose independent | rect. | 11 | 1 |
| 624 | 142.62 | atmosphere | 1015 | 43200 | > th | dose dependent | rect. | 11 | 11 |
| 632 | 142.67 | temperature | 15 | 43200 | < th | dose dependent | rect. | 24 | 3 |
| 657 | 142.76 | radiation | 40 | 43200 | < th | dose independent | rect. | 22 | 10 |
| 704 | 142.92 | temperature | 15 | 43200 | < th | dose dependent | rect. | 24 | 1 |
| 736 | 143.02 | temperature | 20 | 4320 | > th | dose independent | rect. | 21 | 10 |
| 742 | 143.05 | humidity | 60 | 43200 | < th | dose dependent | rect. | 8 | 6 |
| 760 | 143.11 | radiation | 40 | 43200 | < th | dose independent | rect. | 13 | 1 |
| 762 | 143.11 | temperature | 25 | 270 | < th | dose dependent | rect. | 22 | 21 |
| 771 | 143.15 | temperature | 20 | 4320 | < th | dose independent | rect. | 21 | 10 |
| 772 | 143.15 | atmosphere | 1015 | 43200 | > th | dose dependent | rect. | 19 | 3 |
| 823 | 143.34 | radiation | 40 | 43200 | < th | dose independent | rect. | 13 | 19 |
| 826 | 143.34 | humidity | 60 | 43200 | < th | dose dependent | rect. | 19 | 19 |
| 859 | 143.45 | radiation | 40 | 43200 | < th | dose independent | rect. | 11 | 21 |
| 876 | 143.49 | temperature | 20 | 4320 | > th | dose independent | rect. | 18 | 13 |
| 897 | 143.55 | atmosphere | 1015 | 43200 | > th | dose dependent | rect. | 17 | 6 |
| 905 | 143.57 | temperature | 20 | 4320 | < th | dose independent | rect. | 21 | 3 |
| 915 | 143.59 | radiation | 40 | 43200 | < th | dose independent | rect. | 13 | 3 |
| 923 | 143.61 | humidity | 60 | 43200 | < th | dose dependent | rect. | 12 | 1 |
| 927 | 143.62 | radiation | 40 | 43200 | < th | dose independent | rect. | 13 | 8 |
| 928 | 143.62 | radiation | 40 | 43200 | < th | dose independent | rect. | 13 | 10 |
| 934 | 143.63 | temperature | 15 | 43200 | > th | dose independent | rect. | 3 | 1 |
| 937 | 143.63 | radiation | 40 | 43200 | < th | dose independent | rect. | 13 | 6 |
| 941 | 143.63 | radiation | 40 | 43200 | < th | dose independent | rect. | 13 | 15 |
| 942 | 143.63 | radiation | 40 | 43200 | < th | dose independent | rect. | 13 | 17 |
| 953 | 143.65 | radiation | 10 | 43200 | < th | dose independent | rect. | 12 | 20 |
| 962 | 143.67 | temperature | 15 | 43200 | < th | dose independent | rect. | 21 | 7 |
| 963 | 143.67 | radiation | 30 | 43200 | > th | dose dependent | rect. | 7 | 1 |
| 994 | 143.71 | temperature | 15 | 43200 | < th | dose independent | rect. | 24 | 4 |