Os03g0732700
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Similar to Homeodomain protein JUBEL1.
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Os03g0732700 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Similar to Homeodomain protein JUBEL1.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = temperature,
response mode = > th, dose dependency = dose independent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 96.37 | 0.461 | 6.97 | -0.395 | 2.06 | -0.504 | -0.402 | 1.58 | 0.0432 | 13.3 | 21.8 | 694 | -- | -- |
| 105.88 | 0.479 | 7.01 | -0.76 | 1.99 | -0.558 | -0.622 | -- | -0.0291 | 13 | 21.49 | 1010 | -- | -- |
| 96.83 | 0.458 | 6.97 | -0.373 | 2.06 | -0.51 | -- | 1.67 | 0.0571 | 13.3 | 22.1 | 719 | -- | -- |
| 105.5 | 0.478 | 7.02 | -0.844 | 2.08 | -0.598 | -- | -- | -0.0665 | 13.3 | 21.2 | 647 | -- | -- |
| 317.53 | 0.83 | 6.92 | -0.178 | -- | -1.3 | -- | 1.56 | 0.211 | -- | 24.9 | 981 | -- | -- |
| 116.26 | 0.505 | 7.05 | -1.05 | 2.12 | -- | -0.691 | -- | -0.233 | 13.1 | -- | -- | -- | -- |
| 118.22 | 0.509 | 7.06 | -1.07 | 2.12 | -- | -- | -- | -0.236 | 13.2 | -- | -- | -- | -- |
| 326.42 | 0.841 | 6.97 | -0.688 | -- | -1.34 | -- | -- | 0.225 | -- | 24.7 | 972 | -- | -- |
| 115.62 | 0.501 | 6.98 | -- | 2.09 | -0.887 | -- | -- | 0.126 | 13.1 | 21.2 | 22418 | -- | -- |
| 396.21 | 0.93 | 7.09 | -1.15 | -- | -- | -- | -- | -0.279 | -- | -- | -- | -- | -- |
| 148.49 | 0.57 | 7.03 | -- | 2.14 | -- | -- | -- | -0.117 | 13.2 | -- | -- | -- | -- |
| 338.66 | 0.857 | 6.95 | -- | -- | -1.49 | -- | -- | 0.349 | -- | 24.7 | 976 | -- | -- |
| 431.26 | 0.969 | 7.06 | -- | -- | -- | -- | -- | -0.151 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 85.33 | temperature | 25 | 720 | < th | dose dependent | rect. | 20 | 10 |
| 10 | 86.32 | temperature | 20 | 720 | > th | dose dependent | rect. | 1 | 2 |
| 33 | 88.27 | temperature | 25 | 720 | < th | dose dependent | sin | 11 | NA |
| 91 | 90.59 | temperature | 20 | 720 | < th | dose independent | rect. | 20 | 10 |
| 101 | 90.80 | temperature | 25 | 720 | < th | dose dependent | rect. | 23 | 2 |
| 164 | 92.27 | temperature | 25 | 720 | < th | dose dependent | rect. | 1 | 5 |
| 188 | 92.57 | temperature | 25 | 720 | < th | dose dependent | rect. | 3 | 2 |
| 205 | 92.90 | temperature | 30 | 720 | < th | dose dependent | rect. | 3 | 5 |
| 217 | 93.06 | temperature | 20 | 720 | < th | dose independent | sin | 10 | NA |
| 271 | 93.76 | temperature | 20 | 720 | > th | dose dependent | sin | 9 | NA |
| 297 | 94.02 | temperature | 20 | 720 | > th | dose dependent | rect. | 19 | 16 |
| 306 | 94.12 | temperature | 20 | 720 | < th | dose independent | rect. | 1 | 4 |
| 329 | 94.34 | temperature | 20 | 720 | > th | dose independent | rect. | 1 | 2 |
| 333 | 94.44 | temperature | 20 | 720 | < th | dose independent | rect. | 3 | 2 |
| 375 | 94.84 | temperature | 20 | 270 | > th | dose dependent | rect. | 24 | 10 |
| 470 | 95.75 | temperature | 30 | 720 | < th | dose dependent | rect. | 5 | 1 |
| 533 | 96.23 | temperature | 30 | 270 | < th | dose dependent | rect. | 3 | 10 |
| 539 | 96.29 | temperature | 20 | 720 | > th | dose independent | rect. | 1 | 4 |
| 606 | 96.68 | temperature | 20 | 720 | > th | dose independent | rect. | 23 | 6 |
| 707 | 97.25 | temperature | 25 | 270 | < th | dose independent | rect. | 4 | 8 |
| 711 | 97.27 | temperature | 25 | 270 | < th | dose independent | rect. | 5 | 6 |
| 758 | 97.54 | temperature | 15 | 30 | > th | dose dependent | rect. | 1 | 21 |
| 770 | 97.62 | temperature | 15 | 270 | > th | dose dependent | rect. | 23 | 21 |
| 819 | 97.95 | temperature | 30 | 10 | < th | dose independent | rect. | 7 | 10 |
| 827 | 98.00 | temperature | 10 | 270 | > th | dose dependent | sin | 8 | NA |
| 938 | 98.51 | temperature | 30 | 270 | < th | dose dependent | rect. | 7 | 1 |
| 996 | 98.77 | temperature | 20 | 720 | > th | dose independent | rect. | 17 | 20 |