Os03g0731100
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Photosystem I reaction centre subunit N family protein.
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Os03g0731100 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Photosystem I reaction centre subunit N family protein.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = temperature,
response mode = > th, dose dependency = dose dependent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 112.65 | 0.499 | 13.3 | -2 | 1.3 | 1.02 | -0.31 | -2.5 | -0.754 | 23.2 | 21.38 | 1479 | -- | -- |
| 116.85 | 0.503 | 13.2 | -1.38 | 1.31 | 0.943 | -0.383 | -- | -0.588 | 23.2 | 20.57 | 5824 | -- | -- |
| 113.05 | 0.495 | 13.3 | -1.99 | 1.3 | 1.02 | -- | -2.49 | -0.749 | 23.2 | 21.4 | 1480 | -- | -- |
| 117.47 | 0.505 | 13.2 | -1.36 | 1.32 | 0.942 | -- | -- | -0.577 | 23.2 | 20.41 | 5824 | -- | -- |
| 177.89 | 0.621 | 13.2 | -1.72 | -- | 1.73 | -- | -1.85 | -0.739 | -- | 16.31 | 888 | -- | -- |
| 142.86 | 0.56 | 13.1 | -0.914 | 1.33 | -- | -0.316 | -- | -0.333 | 23.3 | -- | -- | -- | -- |
| 143.28 | 0.561 | 13.1 | -0.902 | 1.33 | -- | -- | -- | -0.332 | 23.3 | -- | -- | -- | -- |
| 179.52 | 0.624 | 13.2 | -1.44 | -- | 1.98 | -- | -- | -0.663 | -- | 16.5 | 872 | -- | -- |
| 153.38 | 0.577 | 13.1 | -- | 1.32 | 0.476 | -- | -- | -0.225 | 23.2 | 27.8 | 5870 | -- | -- |
| 254.57 | 0.746 | 13.1 | -0.868 | -- | -- | -- | -- | -0.319 | -- | -- | -- | -- | -- |
| 164.71 | 0.6 | 13.1 | -- | 1.32 | -- | -- | -- | -0.232 | 23.3 | -- | -- | -- | -- |
| 228.34 | 0.704 | 13.1 | -- | -- | 1.44 | -- | -- | -0.43 | -- | 17 | 849 | -- | -- |
| 274.45 | 0.773 | 13.1 | -- | -- | -- | -- | -- | -0.223 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 100.58 | temperature | 20 | 720 | > th | dose dependent | rect. | 21 | 14 |
| 2 | 100.67 | temperature | 20 | 720 | > th | dose dependent | rect. | 23 | 10 |
| 4 | 101.54 | temperature | 20 | 720 | > th | dose dependent | sin | 8 | NA |
| 14 | 102.24 | temperature | 25 | 720 | < th | dose dependent | rect. | 23 | 8 |
| 19 | 102.76 | temperature | 30 | 720 | < th | dose dependent | rect. | 1 | 8 |
| 38 | 103.64 | temperature | 30 | 720 | < th | dose dependent | sin | 8 | NA |
| 40 | 103.73 | temperature | 25 | 720 | < th | dose dependent | rect. | 3 | 2 |
| 265 | 108.23 | temperature | 20 | 720 | < th | dose independent | rect. | 5 | 1 |
| 274 | 108.33 | temperature | 10 | 720 | > th | dose dependent | rect. | 23 | 18 |
| 319 | 108.70 | temperature | 20 | 720 | < th | dose independent | rect. | 3 | 4 |
| 338 | 108.96 | humidity | 90 | 43200 | > th | dose independent | rect. | 22 | 1 |
| 343 | 109.00 | humidity | 90 | 43200 | > th | dose dependent | rect. | 22 | 1 |
| 366 | 109.26 | temperature | 20 | 720 | > th | dose independent | rect. | 2 | 7 |
| 400 | 109.61 | humidity | 90 | 43200 | < th | dose independent | rect. | 21 | 2 |
| 404 | 109.63 | humidity | 80 | 43200 | > th | dose dependent | rect. | 2 | 21 |
| 407 | 109.65 | humidity | 90 | 43200 | > th | dose dependent | rect. | 21 | 3 |
| 427 | 109.78 | humidity | 80 | 43200 | > th | dose dependent | rect. | 2 | 16 |
| 429 | 109.79 | humidity | 80 | 43200 | > th | dose dependent | rect. | 3 | 12 |
| 433 | 109.81 | humidity | 90 | 43200 | > th | dose independent | rect. | 20 | 20 |
| 462 | 109.93 | humidity | 80 | 43200 | > th | dose dependent | sin | 3 | NA |
| 469 | 109.94 | temperature | 20 | 1440 | > th | dose dependent | rect. | 18 | 3 |
| 483 | 109.99 | humidity | 90 | 43200 | > th | dose independent | rect. | 1 | 23 |
| 485 | 110.00 | humidity | 90 | 43200 | > th | dose independent | rect. | 9 | 23 |
| 501 | 110.03 | humidity | 90 | 43200 | > th | dose dependent | rect. | 5 | 2 |
| 505 | 110.05 | humidity | 90 | 43200 | > th | dose independent | rect. | 11 | 23 |
| 509 | 110.07 | humidity | 90 | 43200 | > th | dose independent | no | NA | NA |
| 510 | 110.07 | humidity | 90 | 43200 | > th | dose dependent | rect. | 4 | 4 |
| 550 | 110.13 | humidity | 80 | 43200 | > th | dose dependent | rect. | 8 | 18 |
| 554 | 110.14 | humidity | 90 | 43200 | > th | dose independent | rect. | 5 | 23 |
| 568 | 110.15 | humidity | 90 | 43200 | > th | dose dependent | rect. | 11 | 21 |
| 590 | 110.18 | humidity | 90 | 43200 | > th | dose dependent | rect. | 18 | 23 |
| 597 | 110.19 | humidity | 90 | 43200 | > th | dose dependent | rect. | 20 | 23 |
| 600 | 110.20 | humidity | 90 | 43200 | > th | dose dependent | no | NA | NA |
| 603 | 110.20 | humidity | 90 | 43200 | > th | dose dependent | rect. | 14 | 23 |
| 631 | 110.23 | humidity | 90 | 43200 | > th | dose dependent | rect. | 22 | 23 |
| 640 | 110.25 | humidity | 90 | 43200 | > th | dose independent | sin | 5 | NA |
| 647 | 110.26 | humidity | 80 | 43200 | > th | dose dependent | rect. | 10 | 15 |
| 754 | 110.39 | humidity | 90 | 43200 | < th | dose independent | rect. | 17 | 22 |
| 767 | 110.41 | humidity | 90 | 43200 | > th | dose independent | rect. | 1 | 15 |
| 771 | 110.41 | humidity | 90 | 43200 | > th | dose dependent | sin | 16 | NA |
| 818 | 110.47 | humidity | 90 | 43200 | < th | dose independent | rect. | 24 | 23 |
| 827 | 110.48 | humidity | 90 | 43200 | < th | dose independent | rect. | 2 | 23 |
| 839 | 110.50 | humidity | 90 | 43200 | < th | dose independent | rect. | 6 | 23 |
| 848 | 110.51 | humidity | 90 | 43200 | < th | dose independent | rect. | 9 | 23 |
| 863 | 110.53 | humidity | 90 | 43200 | < th | dose independent | no | NA | NA |
| 864 | 110.53 | humidity | 80 | 43200 | > th | dose independent | rect. | 12 | 2 |
| 872 | 110.54 | humidity | 90 | 43200 | > th | dose independent | sin | 17 | NA |
| 882 | 110.55 | humidity | 90 | 43200 | < th | dose independent | rect. | 13 | 23 |
| 889 | 110.56 | humidity | 90 | 43200 | < th | dose independent | rect. | 4 | 23 |
| 893 | 110.57 | humidity | 80 | 43200 | < th | dose independent | rect. | 12 | 2 |
| 930 | 110.60 | humidity | 70 | 43200 | > th | dose dependent | rect. | 12 | 3 |