Os03g0730800
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Similar to Calcium-transporting ATPase 3, endoplasmic reticulum-type (EC 3.6.3.8).
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Os03g0730800 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Similar to Calcium-transporting ATPase 3, endoplasmic reticulum-type (EC 3.6.3.8).
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = temperature,
response mode = > th, dose dependency = dose independent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 55.84 | 0.351 | 8.28 | -0.811 | 0.505 | 0.93 | -0.23 | 0.902 | 0.024 | 24 | 21.4 | 1396 | -- | -- |
| 56.47 | 0.35 | 8.32 | -0.944 | 0.516 | 0.842 | -0.115 | -- | -0.049 | 23.7 | 22.23 | 1346 | -- | -- |
| 56.07 | 0.349 | 8.28 | -0.806 | 0.509 | 0.933 | -- | 0.892 | 0.0235 | 0.0246 | 21.41 | 1412 | -- | -- |
| 55.51 | 0.347 | 8.31 | -0.944 | 0.409 | 0.772 | -- | -- | -0.0338 | 0.369 | 22.1 | 999 | -- | -- |
| 65.24 | 0.376 | 8.3 | -0.803 | -- | 0.904 | -- | 0.462 | -0.0592 | -- | 22.18 | 963 | -- | -- |
| 79.39 | 0.418 | 8.25 | -0.689 | 0.535 | -- | -0.249 | -- | 0.219 | 0.14 | -- | -- | -- | -- |
| 79.66 | 0.418 | 8.25 | -0.679 | 0.536 | -- | -- | -- | 0.22 | 0.166 | -- | -- | -- | -- |
| 65.26 | 0.376 | 8.31 | -0.939 | -- | 0.842 | -- | -- | -0.06 | -- | 22.2 | 889 | -- | -- |
| 76.33 | 0.407 | 8.27 | -- | 0.427 | 0.56 | -- | -- | 0.124 | 0.426 | 22.3 | 787 | -- | -- |
| 97.75 | 0.462 | 8.24 | -0.662 | -- | -- | -- | -- | 0.228 | -- | -- | -- | -- | -- |
| 91.82 | 0.448 | 8.24 | -- | 0.527 | -- | -- | -- | 0.296 | 0.0955 | -- | -- | -- | -- |
| 86.97 | 0.434 | 8.27 | -- | -- | 0.665 | -- | -- | 0.096 | -- | 22.35 | 859 | -- | -- |
| 109.31 | 0.488 | 8.22 | -- | -- | -- | -- | -- | 0.302 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 56.67 | temperature | 25 | 720 | < th | dose dependent | rect. | 1 | 22 |
| 2 | 56.68 | temperature | 25 | 1440 | < th | dose dependent | rect. | 21 | 1 |
| 3 | 56.69 | temperature | 25 | 1440 | < th | dose dependent | rect. | 17 | 5 |
| 7 | 56.71 | temperature | 25 | 720 | < th | dose dependent | rect. | 17 | 22 |
| 9 | 56.71 | temperature | 25 | 720 | < th | dose dependent | rect. | 4 | 23 |
| 10 | 56.71 | temperature | 25 | 720 | < th | dose dependent | rect. | 8 | 23 |
| 23 | 56.78 | temperature | 25 | 720 | < th | dose dependent | no | NA | NA |
| 27 | 56.79 | temperature | 25 | 720 | < th | dose dependent | rect. | 13 | 23 |
| 33 | 56.85 | temperature | 25 | 1440 | < th | dose dependent | rect. | 17 | 9 |
| 42 | 56.89 | temperature | 25 | 720 | < th | dose dependent | rect. | 21 | 23 |
| 53 | 56.94 | temperature | 25 | 720 | < th | dose dependent | rect. | 19 | 23 |
| 106 | 57.20 | temperature | 25 | 1440 | < th | dose dependent | sin | 15 | NA |
| 275 | 57.98 | temperature | 15 | 720 | > th | dose dependent | rect. | 18 | 17 |
| 290 | 58.04 | temperature | 10 | 1440 | > th | dose dependent | rect. | 20 | 9 |
| 316 | 58.08 | temperature | 15 | 720 | > th | dose dependent | rect. | 18 | 19 |
| 417 | 58.26 | temperature | 10 | 720 | > th | dose dependent | sin | 10 | NA |
| 499 | 58.40 | temperature | 25 | 1440 | < th | dose dependent | rect. | 1 | 4 |
| 519 | 58.44 | temperature | 25 | 1440 | < th | dose dependent | rect. | 3 | 2 |
| 564 | 58.52 | temperature | 25 | 1440 | < th | dose dependent | rect. | 1 | 1 |
| 592 | 58.56 | temperature | 10 | 1440 | > th | dose dependent | rect. | 21 | 1 |
| 651 | 58.63 | temperature | 15 | 1440 | > th | dose dependent | rect. | 1 | 4 |
| 694 | 58.69 | temperature | 15 | 1440 | > th | dose dependent | rect. | 3 | 2 |
| 780 | 58.78 | temperature | 15 | 1440 | > th | dose dependent | rect. | 1 | 1 |