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Notice!
This gene did NOT pass the analysis criteria (log2(expression) > 5 in more than 80% of samples & normality of residuals was not rejected).
The modeling results may be unreliable.

Os03g0729800

blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II

Description : Amino acid-binding ACT domain containing protein.


log2(Expression) ~ Norm(μ, σ2)

μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8

par. value (S.E.)
α : 4.14 (0.0503) R2 : 0.171
β1 : -- (--) R2dD : -- R2D : --
β2 : -- (--) R2dC : -- R2C : --
β3 : -0.807 (0.155) R2dE : 0.0538 R2E : 0.0676
β4 : -- (--) R2dD*C : -- R2D*C : --
β5 : -- (--) R2dD*E : -- R2D*E : --
γ1 : -0.695 (0.109) R2dN8 : 0.103 R2N8 : 0.117
σ : 0.936
deviance : 403.6
__
_____
C
peak time of C : --
E
wheather : temperature
threshold : 20.87
memory length : 635
response mode : > th
dose dependency : dose independent
G
type of G : no
peak or start time of G : --
open length of G : --

__

Dependence on each variable

Residual plot

Process of the parameter reduction
(fixed parameters. wheather = temperature, response mode = > th, dose dependency = dose independent, type of G = no)

deviance σ α β1 β2 β3 β4 β5 γ1 peak time of C threshold memory length peak or start time of G open length of G
390.54 0.928 4.13 0.543 0.245 -0.965 -0.303 -0.347 -0.633 7.87 20.7 641 -- --
390.83 0.921 4.12 0.599 0.253 -0.923 -0.125 -- -0.618 8.05 20.6 619 -- --
390.65 0.921 4.13 0.544 0.246 -0.946 -- -0.277 -0.636 8.46 20.6 617 -- --
390.84 0.921 4.12 0.603 0.25 -0.926 -- -- -0.616 8.53 20.6 617 -- --
393.71 0.924 4.13 0.557 -- -1 -- -0.35 -0.609 -- 20.8 661 -- --
417.17 0.958 4.16 0.274 0.39 -- -0.033 -- -0.83 8.56 -- -- -- --
417.17 0.956 4.16 0.273 0.389 -- -- -- -0.83 8.58 -- -- -- --
394.09 0.925 4.12 0.635 -- -0.976 -- -- -0.591 -- 20.83 661 -- --
399.34 0.931 4.14 -- 0.281 -0.758 -- -- -0.719 8.45 20.6 573 -- --
425.69 0.964 4.17 0.274 -- -- -- -- -0.826 -- -- -- -- --
419.13 0.958 4.17 -- 0.39 -- -- -- -0.86 8.53 -- -- -- --
403.6 0.936 4.14 -- -- -0.807 -- -- -0.695 -- 20.87 635 -- --
427.68 0.965 4.18 -- -- -- -- -- -0.857 -- -- -- -- --

Results of the grid search

Summarized heatmap of deviance
 Histogram

Local optima within top1000 grid-points

rank deviance wheather threshold memory length response mode dose dependency type of G peak or start time of G open length of G
1 382.94 wind 9.0 14400 > th dose dependent rect. 5 8
2 383.31 wind 9.0 14400 > th dose independent rect. 5 8
5 383.96 wind 9.0 14400 > th dose dependent rect. 11 2
6 384.12 wind 9.0 14400 > th dose independent rect. 22 15
12 384.40 wind 9.0 14400 > th dose dependent rect. 9 4
17 384.83 wind 9.0 14400 > th dose independent rect. 9 4
23 384.90 wind 9.0 14400 > th dose independent rect. 11 2
25 385.19 wind 9.0 14400 < th dose independent rect. 4 9
30 385.55 wind 9.0 14400 < th dose independent rect. 1 12
44 386.02 wind 9.0 14400 < th dose independent rect. 11 2
49 386.31 wind 9.0 14400 < th dose independent rect. 21 17
50 386.32 wind 9.0 14400 < th dose independent rect. 23 14
53 386.36 wind 9.0 14400 > th dose dependent rect. 23 14
64 386.73 wind 9.0 14400 > th dose dependent rect. 21 17
66 386.83 temperature 25.0 270 < th dose dependent rect. 24 19
70 387.05 temperature 30.0 270 < th dose dependent rect. 23 11
74 387.14 wind 9.0 14400 < th dose independent rect. 9 4
80 387.35 temperature 30.0 10 < th dose dependent rect. 24 12
92 387.63 wind 9.0 14400 > th dose independent sin 5 NA
116 388.35 wind 9.0 14400 < th dose independent sin 5 NA
117 388.45 wind 9.0 14400 < th dose independent rect. 15 2
118 388.58 wind 9.0 14400 > th dose dependent sin 5 NA
122 388.63 temperature 30.0 30 < th dose dependent rect. 24 19
129 388.80 wind 9.0 14400 > th dose independent rect. 21 20
143 389.14 temperature 30.0 30 < th dose dependent sin 5 NA
175 389.61 temperature 10.0 30 > th dose dependent sin 5 NA
176 389.61 temperature 15.0 270 > th dose dependent rect. 19 14
184 389.68 wind 9.0 14400 < th dose independent rect. 21 20
193 389.79 wind 9.0 14400 > th dose independent rect. 3 14
195 389.79 wind 9.0 14400 > th dose dependent rect. 21 20
202 389.83 temperature 10.0 270 > th dose dependent sin 7 NA
204 389.84 temperature 30.0 270 < th dose dependent sin 7 NA
218 390.05 temperature 20.0 270 > th dose independent rect. 3 11
225 390.09 wind 9.0 14400 > th dose independent rect. 15 2
227 390.11 wind 9.0 14400 < th dose independent rect. 1 16
275 390.52 wind 9.0 14400 > th dose independent rect. 9 8
318 390.88 temperature 20.0 270 > th dose independent rect. 18 21
340 391.08 temperature 20.0 10 > th dose dependent rect. 20 21
358 391.24 temperature 20.0 270 > th dose independent rect. 3 21
370 391.33 wind 9.0 14400 < th dose independent rect. 9 8
371 391.33 temperature 20.0 270 > th dose independent rect. 19 18
374 391.34 temperature 20.0 270 > th dose independent rect. 19 14
375 391.36 temperature 20.0 270 < th dose independent rect. 1 20
382 391.40 wind 9.0 14400 > th dose dependent rect. 3 14
385 391.41 temperature 20.0 720 > th dose independent rect. 4 18
395 391.47 temperature 15.0 90 > th dose dependent rect. 19 22
398 391.50 atmosphere 1000.0 1440 > th dose independent rect. 21 15
408 391.56 humidity 90.0 14400 < th dose dependent rect. 1 1
412 391.58 atmosphere 1000.0 1440 < th dose independent rect. 21 15
421 391.64 temperature 20.0 270 < th dose independent rect. 3 6
422 391.65 atmosphere 1000.0 1440 > th dose independent rect. 8 1
434 391.75 atmosphere 1000.0 1440 > th dose independent rect. 21 12
444 391.83 temperature 20.0 720 > th dose independent rect. 11 20
445 391.83 wind 9.0 14400 > th dose dependent rect. 9 8
453 391.84 precipitation 0.1 14400 > th dose dependent rect. 20 3
513 392.10 precipitation 0.1 14400 > th dose dependent rect. 21 1
560 392.37 temperature 20.0 720 > th dose independent rect. 19 12
608 392.56 temperature 15.0 270 > th dose dependent rect. 19 18
646 392.75 temperature 20.0 270 > th dose independent sin 5 NA
647 392.75 precipitation 0.1 14400 < th dose independent rect. 21 1
648 392.75 precipitation 0.1 14400 < th dose dependent rect. 21 1
654 392.78 precipitation 0.1 14400 > th dose independent rect. 21 1
676 392.86 atmosphere 1000.0 1440 < th dose dependent rect. 24 12
678 392.87 temperature 10.0 720 > th dose dependent rect. 19 12
739 393.06 temperature 20.0 270 < th dose independent sin 5 NA
756 393.13 temperature 25.0 720 < th dose dependent rect. 17 19
788 393.21 temperature 20.0 10 > th dose dependent rect. 20 17
795 393.23 temperature 25.0 720 < th dose dependent rect. 17 15
820 393.29 temperature 25.0 1440 < th dose dependent rect. 17 1
839 393.35 atmosphere 1000.0 1440 > th dose independent rect. 5 4
884 393.47 atmosphere 1000.0 30 > th dose independent rect. 17 13
886 393.47 temperature 25.0 720 < th dose dependent sin 11 NA
901 393.50 atmosphere 1000.0 1440 > th dose independent rect. 1 1
970 393.65 wind 1.0 14400 < th dose dependent rect. 9 2