Os03g0728700
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Conserved hypothetical protein.
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Os03g0728700 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Conserved hypothetical protein.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = radiation,
response mode = < th, dose dependency = dose independent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 230.31 | 0.713 | 3.12 | 0.304 | 0.0245 | -0.811 | -0.852 | -1.35 | -0.12 | 18.5 | 48.9 | 10 | -- | -- |
| 233.6 | 0.712 | 3.12 | 0.324 | 0.042 | -0.774 | -1 | -- | -0.12 | 19.8 | 48.87 | 10 | -- | -- |
| 232 | 0.709 | 3.12 | 0.316 | 0.0699 | -0.767 | -- | -1.38 | -0.127 | 15.1 | 48.87 | 10 | -- | -- |
| 236.15 | 0.716 | 3.12 | 0.355 | 0.0571 | -0.733 | -- | -- | -0.117 | 14 | 48.88 | 10 | -- | -- |
| 232.15 | 0.71 | 3.12 | 0.313 | -- | -0.808 | -- | -1.42 | -0.131 | -- | 48.88 | 10 | -- | -- |
| 247.13 | 0.737 | 3.11 | 0.304 | 0.217 | -- | 0.518 | -- | -0.111 | 11.4 | -- | -- | -- | -- |
| 247.88 | 0.737 | 3.11 | 0.327 | 0.23 | -- | -- | -- | -0.107 | 12.9 | -- | -- | -- | -- |
| 236.32 | 0.716 | 3.12 | 0.36 | -- | -0.761 | -- | -- | -0.12 | -- | 48.9 | 10 | -- | -- |
| 239.45 | 0.721 | 3.12 | -- | 0.0682 | -0.701 | -- | -- | -0.135 | 14.7 | 48.87 | 10 | -- | -- |
| 251.17 | 0.741 | 3.11 | 0.319 | -- | -- | -- | -- | -0.111 | -- | -- | -- | -- | -- |
| 250.71 | 0.741 | 3.11 | -- | 0.224 | -- | -- | -- | -0.144 | 12.8 | -- | -- | -- | -- |
| 239.59 | 0.721 | 3.12 | -- | -- | -0.739 | -- | -- | -0.153 | -- | 49.06 | 10 | -- | -- |
| 253.85 | 0.744 | 3.12 | -- | -- | -- | -- | -- | -0.147 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 213.42 | temperature | 20 | 10 | < th | dose dependent | rect. | 8 | 9 |
| 7 | 224.98 | temperature | 20 | 10 | < th | dose independent | rect. | 8 | 9 |
| 17 | 228.45 | radiation | 40 | 10 | > th | dose independent | rect. | 11 | 2 |
| 19 | 228.52 | radiation | 1 | 90 | < th | dose independent | rect. | 14 | 1 |
| 20 | 228.52 | radiation | 1 | 90 | < th | dose dependent | rect. | 14 | 1 |
| 22 | 228.84 | radiation | 40 | 90 | > th | dose independent | rect. | 10 | 3 |
| 23 | 228.84 | temperature | 20 | 90 | < th | dose dependent | rect. | 12 | 4 |
| 24 | 228.86 | temperature | 20 | 10 | < th | dose dependent | rect. | 12 | 5 |
| 49 | 229.73 | temperature | 25 | 90 | < th | dose dependent | rect. | 14 | 1 |
| 50 | 229.75 | radiation | 30 | 90 | > th | dose dependent | rect. | 11 | 2 |
| 61 | 230.06 | humidity | 80 | 4320 | < th | dose independent | rect. | 3 | 5 |
| 99 | 230.54 | radiation | 30 | 10 | > th | dose dependent | rect. | 11 | 3 |
| 103 | 230.64 | humidity | 90 | 4320 | < th | dose dependent | rect. | 3 | 5 |
| 111 | 230.71 | humidity | 80 | 4320 | > th | dose independent | rect. | 3 | 5 |
| 116 | 230.83 | temperature | 20 | 90 | < th | dose independent | rect. | 12 | 4 |
| 118 | 230.85 | temperature | 20 | 10 | < th | dose independent | rect. | 8 | 2 |
| 124 | 230.85 | temperature | 20 | 10 | < th | dose dependent | rect. | 8 | 2 |
| 194 | 231.61 | humidity | 80 | 4320 | > th | dose independent | rect. | 22 | 10 |
| 273 | 232.00 | humidity | 80 | 4320 | < th | dose independent | rect. | 20 | 12 |
| 286 | 232.25 | temperature | 20 | 90 | < th | dose independent | rect. | 14 | 2 |
| 288 | 232.26 | temperature | 20 | 10 | < th | dose independent | rect. | 15 | 1 |
| 355 | 232.95 | radiation | 40 | 10 | > th | dose dependent | sin | 16 | NA |
| 359 | 233.01 | humidity | 80 | 4320 | < th | dose independent | rect. | 5 | 1 |
| 411 | 233.20 | humidity | 80 | 4320 | < th | dose dependent | rect. | 5 | 1 |
| 415 | 233.26 | atmosphere | 1005 | 30 | > th | dose dependent | rect. | 15 | 1 |
| 428 | 233.36 | humidity | 80 | 4320 | > th | dose independent | rect. | 5 | 1 |
| 451 | 233.56 | temperature | 25 | 10 | > th | dose dependent | rect. | 12 | 1 |
| 561 | 233.88 | wind | 1 | 720 | > th | dose dependent | rect. | 2 | 1 |
| 563 | 233.90 | humidity | 60 | 4320 | > th | dose dependent | rect. | 4 | 4 |
| 566 | 233.92 | wind | 5 | 10 | > th | dose independent | rect. | 8 | 1 |
| 569 | 233.92 | wind | 5 | 10 | > th | dose dependent | rect. | 8 | 1 |
| 571 | 233.93 | wind | 3 | 10 | > th | dose independent | rect. | 12 | 1 |
| 590 | 234.04 | atmosphere | 1005 | 30 | > th | dose independent | rect. | 15 | 1 |
| 637 | 234.25 | wind | 1 | 10 | > th | dose dependent | rect. | 12 | 1 |
| 647 | 234.33 | atmosphere | 1015 | 10 | < th | dose dependent | rect. | 12 | 1 |
| 659 | 234.39 | humidity | 50 | 4320 | > th | dose dependent | rect. | 2 | 7 |
| 662 | 234.41 | humidity | 80 | 4320 | < th | dose independent | sin | 9 | NA |
| 695 | 234.68 | humidity | 80 | 4320 | > th | dose independent | sin | 9 | NA |
| 703 | 234.74 | radiation | 40 | 10 | < th | dose independent | sin | 18 | NA |
| 817 | 235.15 | radiation | 40 | 10 | > th | dose dependent | no | NA | NA |