Os03g0728600
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : RuvA domain 2-like containing protein.
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Os03g0728600 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : RuvA domain 2-like containing protein.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = humidity,
response mode = > th, dose dependency = dose independent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 54.09 | 0.346 | 10.1 | -0.51 | 1.11 | 0.57 | 0.00256 | 0.972 | 0.202 | 18.5 | 71 | 2742 | -- | -- |
| 55.64 | 0.347 | 10.1 | -0.443 | 1.13 | 0.683 | -0.00647 | -- | 0.257 | 18.5 | 71.66 | 2730 | -- | -- |
| 54.07 | 0.342 | 10.1 | -0.508 | 1.11 | 0.574 | -- | 0.965 | 0.202 | 18.5 | 70.97 | 2726 | -- | -- |
| 55.27 | 0.346 | 10.1 | -0.38 | 1.13 | 0.68 | -- | -- | 0.254 | 18.5 | 70.52 | 2691 | -- | -- |
| 118.29 | 0.507 | 10.1 | -0.554 | -- | 0.631 | -- | 1.09 | 0.174 | -- | 72 | 2776 | -- | -- |
| 68.19 | 0.387 | 10.1 | -0.463 | 1.14 | -- | 0.0467 | -- | 0.16 | 18.2 | -- | -- | -- | -- |
| 68.19 | 0.387 | 10.1 | -0.463 | 1.14 | -- | -- | -- | 0.16 | 18.2 | -- | -- | -- | -- |
| 119.44 | 0.509 | 10.1 | -0.416 | -- | 0.761 | -- | -- | 0.236 | -- | 72.72 | 2763 | -- | -- |
| 58.84 | 0.357 | 10.1 | -- | 1.12 | 0.716 | -- | -- | 0.288 | 18.5 | 70.61 | 2688 | -- | -- |
| 135.37 | 0.544 | 10.1 | -0.494 | -- | -- | -- | -- | 0.135 | -- | -- | -- | -- | -- |
| 73.85 | 0.402 | 10.1 | -- | 1.14 | -- | -- | -- | 0.212 | 18.2 | -- | -- | -- | -- |
| 123.74 | 0.518 | 10.1 | -- | -- | 0.79 | -- | -- | 0.29 | -- | 71.92 | 2764 | -- | -- |
| 141.82 | 0.556 | 10.1 | -- | -- | -- | -- | -- | 0.19 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 51.54 | humidity | 70.0 | 14400 | < th | dose independent | rect. | 18 | 14 |
| 2 | 51.56 | humidity | 70.0 | 14400 | > th | dose independent | rect. | 18 | 14 |
| 3 | 51.75 | humidity | 70.0 | 14400 | < th | dose independent | rect. | 18 | 3 |
| 15 | 51.82 | humidity | 70.0 | 14400 | > th | dose independent | rect. | 18 | 11 |
| 16 | 51.83 | humidity | 70.0 | 14400 | > th | dose independent | rect. | 18 | 3 |
| 22 | 51.84 | humidity | 70.0 | 14400 | > th | dose independent | rect. | 18 | 8 |
| 26 | 51.85 | humidity | 70.0 | 14400 | < th | dose dependent | rect. | 18 | 1 |
| 30 | 52.04 | humidity | 70.0 | 14400 | < th | dose dependent | rect. | 18 | 14 |
| 31 | 52.08 | temperature | 25.0 | 14400 | > th | dose dependent | rect. | 7 | 1 |
| 33 | 52.12 | temperature | 25.0 | 14400 | > th | dose independent | rect. | 7 | 1 |
| 44 | 52.18 | temperature | 25.0 | 14400 | < th | dose independent | rect. | 7 | 1 |
| 45 | 52.18 | wind | 1.0 | 43200 | > th | dose independent | rect. | 24 | 5 |
| 47 | 52.23 | humidity | 70.0 | 14400 | > th | dose dependent | rect. | 19 | 1 |
| 53 | 52.32 | temperature | 25.0 | 14400 | < th | dose independent | rect. | 6 | 3 |
| 57 | 52.35 | wind | 1.0 | 43200 | < th | dose dependent | rect. | 1 | 12 |
| 64 | 52.43 | wind | 1.0 | 43200 | < th | dose dependent | rect. | 3 | 10 |
| 66 | 52.44 | temperature | 25.0 | 14400 | > th | dose dependent | rect. | 19 | 2 |
| 79 | 52.44 | humidity | 60.0 | 14400 | < th | dose dependent | rect. | 16 | 17 |
| 91 | 52.50 | wind | 1.0 | 43200 | < th | dose independent | rect. | 24 | 5 |
| 125 | 52.56 | temperature | 25.0 | 14400 | > th | dose dependent | rect. | 19 | 15 |
| 208 | 52.82 | wind | 9.0 | 43200 | < th | dose dependent | rect. | 4 | 2 |
| 236 | 52.84 | wind | 3.0 | 43200 | < th | dose dependent | rect. | 3 | 3 |
| 267 | 52.91 | humidity | 70.0 | 14400 | < th | dose independent | sin | 12 | NA |
| 274 | 52.92 | temperature | 25.0 | 14400 | > th | dose dependent | sin | 9 | NA |
| 277 | 52.92 | wind | 5.0 | 43200 | < th | dose dependent | rect. | 1 | 5 |
| 291 | 52.95 | temperature | 10.0 | 14400 | > th | dose dependent | rect. | 9 | 1 |
| 294 | 52.96 | humidity | 70.0 | 14400 | > th | dose independent | sin | 12 | NA |
| 341 | 53.04 | wind | 1.0 | 43200 | > th | dose dependent | rect. | 4 | 2 |
| 355 | 53.07 | temperature | 30.0 | 14400 | < th | dose independent | sin | 10 | NA |
| 356 | 53.07 | temperature | 25.0 | 14400 | > th | dose independent | rect. | 19 | 2 |
| 374 | 53.09 | temperature | 30.0 | 14400 | > th | dose independent | sin | 10 | NA |
| 384 | 53.10 | temperature | 30.0 | 14400 | < th | dose independent | rect. | 17 | 17 |
| 398 | 53.11 | temperature | 30.0 | 14400 | > th | dose independent | rect. | 17 | 17 |
| 399 | 53.11 | temperature | 30.0 | 14400 | < th | dose dependent | rect. | 9 | 1 |
| 424 | 53.14 | wind | 1.0 | 43200 | > th | dose independent | rect. | 24 | 11 |
| 465 | 53.15 | temperature | 25.0 | 14400 | > th | dose dependent | rect. | 6 | 17 |
| 542 | 53.19 | temperature | 30.0 | 14400 | < th | dose independent | rect. | 18 | 21 |
| 559 | 53.20 | temperature | 30.0 | 14400 | < th | dose independent | rect. | 14 | 22 |
| 598 | 53.21 | temperature | 25.0 | 14400 | > th | dose dependent | no | NA | NA |
| 617 | 53.22 | temperature | 30.0 | 14400 | > th | dose independent | rect. | 14 | 22 |
| 689 | 53.25 | temperature | 25.0 | 14400 | > th | dose dependent | rect. | 9 | 23 |
| 731 | 53.28 | temperature | 30.0 | 14400 | < th | dose independent | sin | 3 | NA |
| 750 | 53.28 | temperature | 30.0 | 14400 | < th | dose independent | rect. | 1 | 18 |
| 768 | 53.29 | temperature | 30.0 | 14400 | < th | dose independent | no | NA | NA |
| 769 | 53.29 | precipitation | 0.1 | 43200 | < th | dose independent | rect. | 19 | 2 |
| 771 | 53.29 | temperature | 30.0 | 14400 | < th | dose independent | rect. | 8 | 11 |
| 866 | 53.29 | temperature | 10.0 | 14400 | > th | dose dependent | rect. | 19 | 1 |
| 867 | 53.29 | precipitation | 0.1 | 43200 | < th | dose dependent | rect. | 19 | 2 |
| 876 | 53.30 | temperature | 30.0 | 14400 | > th | dose independent | no | NA | NA |
| 881 | 53.30 | temperature | 30.0 | 14400 | < th | dose independent | rect. | 8 | 7 |
| 894 | 53.30 | temperature | 30.0 | 14400 | > th | dose independent | rect. | 8 | 11 |
| 900 | 53.30 | temperature | 30.0 | 14400 | < th | dose independent | rect. | 1 | 12 |