Os03g0727900
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : GTP-binding protein, HSR1-related domain containing protein.
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Os03g0727900 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : GTP-binding protein, HSR1-related domain containing protein.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = temperature,
response mode = < th, dose dependency = dose dependent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 13.9 | 0.175 | 10.6 | 0.663 | 0.343 | -0.565 | 0.151 | -1.21 | 0.131 | 9.61 | 28.62 | 257 | -- | -- |
| 15.93 | 0.186 | 10.6 | 0.461 | 0.311 | -0.597 | 0.193 | -- | 0.11 | 9.71 | 40.92 | 145 | -- | -- |
| 13.93 | 0.174 | 10.6 | 0.667 | 0.329 | -0.566 | -- | -1.22 | 0.132 | 9.53 | 28.72 | 223 | -- | -- |
| 16.06 | 0.187 | 10.6 | 0.466 | 0.308 | -0.611 | -- | -- | 0.107 | 9.55 | 51.91 | 136 | -- | -- |
| 18.05 | 0.199 | 10.6 | 0.619 | -- | -0.619 | -- | -1.04 | 0.117 | -- | 29.5 | 27 | -- | -- |
| 19.42 | 0.207 | 10.6 | 0.581 | 0.354 | -- | 0.282 | -- | 0.191 | 11.6 | -- | -- | -- | -- |
| 19.76 | 0.208 | 10.6 | 0.592 | 0.353 | -- | -- | -- | 0.192 | 11.5 | -- | -- | -- | -- |
| 19.56 | 0.207 | 10.6 | 0.448 | -- | -0.753 | -- | -- | 0.0887 | -- | 98.31 | 9 | -- | -- |
| 21.19 | 0.214 | 10.6 | -- | 0.32 | -0.84 | -- | -- | 0.0291 | 8.66 | 51.6 | 144 | -- | -- |
| 27.59 | 0.245 | 10.6 | 0.582 | -- | -- | -- | -- | 0.188 | -- | -- | -- | -- | -- |
| 28.99 | 0.252 | 10.6 | -- | 0.347 | -- | -- | -- | 0.126 | 11.4 | -- | -- | -- | -- |
| 24.51 | 0.231 | 10.6 | -- | -- | -0.887 | -- | -- | 0.0225 | -- | 121.6 | 2 | -- | -- |
| 36.54 | 0.282 | 10.6 | -- | -- | -- | -- | -- | 0.123 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 13.38 | temperature | 30 | 270 | < th | dose dependent | rect. | 21 | 22 |
| 13 | 13.77 | temperature | 30 | 270 | < th | dose dependent | rect. | 23 | 18 |
| 15 | 13.77 | temperature | 20 | 270 | > th | dose dependent | rect. | 17 | 22 |
| 33 | 14.02 | temperature | 30 | 270 | < th | dose dependent | no | NA | NA |
| 38 | 14.09 | temperature | 30 | 270 | < th | dose dependent | rect. | 7 | 23 |
| 39 | 14.09 | temperature | 30 | 270 | < th | dose dependent | rect. | 15 | 23 |
| 44 | 14.12 | temperature | 30 | 270 | < th | dose dependent | rect. | 13 | 23 |
| 45 | 14.13 | temperature | 30 | 270 | < th | dose dependent | sin | 5 | NA |
| 57 | 14.22 | temperature | 10 | 270 | > th | dose dependent | sin | 5 | NA |
| 61 | 14.23 | temperature | 25 | 720 | < th | dose dependent | rect. | 3 | 19 |
| 140 | 14.44 | temperature | 10 | 10 | > th | dose dependent | sin | 3 | NA |
| 185 | 14.50 | temperature | 15 | 90 | > th | dose dependent | rect. | 1 | 23 |
| 245 | 14.57 | temperature | 15 | 720 | > th | dose dependent | rect. | 21 | 16 |
| 254 | 14.57 | temperature | 30 | 30 | < th | dose dependent | rect. | 11 | 23 |
| 258 | 14.57 | temperature | 30 | 10 | < th | dose dependent | rect. | 19 | 23 |
| 274 | 14.59 | temperature | 25 | 720 | < th | dose dependent | sin | 0 | NA |
| 275 | 14.59 | temperature | 30 | 10 | < th | dose dependent | no | NA | NA |
| 292 | 14.60 | temperature | 15 | 10 | > th | dose dependent | rect. | 1 | 23 |
| 321 | 14.63 | temperature | 30 | 10 | < th | dose dependent | sin | 3 | NA |
| 363 | 14.66 | temperature | 25 | 1440 | < th | dose dependent | rect. | 5 | 7 |
| 379 | 14.67 | temperature | 10 | 10 | > th | dose dependent | no | NA | NA |
| 459 | 14.72 | temperature | 10 | 90 | > th | dose dependent | no | NA | NA |
| 489 | 14.73 | temperature | 20 | 10 | > th | dose dependent | rect. | 9 | 23 |
| 515 | 14.75 | temperature | 25 | 270 | > th | dose independent | rect. | 5 | 17 |
| 521 | 14.75 | temperature | 25 | 1440 | < th | dose dependent | rect. | 19 | 2 |
| 545 | 14.76 | temperature | 25 | 1440 | < th | dose dependent | rect. | 18 | 4 |
| 586 | 14.77 | temperature | 10 | 270 | > th | dose dependent | rect. | 4 | 23 |
| 612 | 14.78 | temperature | 20 | 90 | > th | dose dependent | rect. | 8 | 23 |
| 613 | 14.78 | temperature | 30 | 30 | < th | dose dependent | rect. | 3 | 23 |
| 622 | 14.79 | temperature | 25 | 1440 | < th | dose dependent | rect. | 7 | 1 |
| 721 | 14.82 | temperature | 20 | 10 | > th | dose dependent | rect. | 17 | 23 |
| 722 | 14.82 | temperature | 30 | 10 | < th | dose dependent | rect. | 1 | 23 |
| 736 | 14.83 | temperature | 30 | 1440 | < th | dose dependent | rect. | 23 | 13 |
| 782 | 14.84 | temperature | 30 | 10 | < th | dose dependent | rect. | 7 | 23 |
| 792 | 14.85 | temperature | 30 | 1440 | < th | dose dependent | rect. | 1 | 11 |
| 811 | 14.85 | temperature | 20 | 10 | > th | dose dependent | rect. | 21 | 23 |
| 926 | 14.89 | temperature | 20 | 10 | > th | dose dependent | rect. | 5 | 19 |
| 967 | 14.90 | temperature | 20 | 10 | > th | dose dependent | rect. | 5 | 23 |
| 974 | 14.91 | temperature | 25 | 1440 | < th | dose dependent | sin | 18 | NA |