Os03g0726200
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Similar to Hydroxyproline-rich glycoprotein DZ-HRGP precursor.
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Os03g0726200 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Similar to Hydroxyproline-rich glycoprotein DZ-HRGP precursor.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = humidity,
response mode = > th, dose dependency = dose independent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 168.29 | 0.61 | 10.7 | -1.17 | 2.9 | 1.5 | 1.34 | 1.06 | 0.319 | 19.3 | 72 | 1225 | -- | -- |
| 170.23 | 0.608 | 10.7 | -1 | 2.92 | 1.58 | 1.28 | -- | 0.368 | 19.3 | 71.97 | 1207 | -- | -- |
| 173.04 | 0.613 | 10.7 | -1.18 | 2.91 | 1.49 | -- | 0.997 | 0.315 | 19.3 | 72 | 1222 | -- | -- |
| 174.64 | 0.615 | 10.7 | -1.03 | 2.92 | 1.56 | -- | -- | 0.369 | 19.3 | 71.8 | 1211 | -- | -- |
| 601 | 1.14 | 10.7 | -1.41 | -- | 1.43 | -- | 1.52 | 0.216 | -- | 71.16 | 1324 | -- | -- |
| 254.54 | 0.748 | 10.7 | -1.33 | 2.88 | -- | 1.06 | -- | 0.147 | 18.8 | -- | -- | -- | -- |
| 257.41 | 0.751 | 10.7 | -1.34 | 2.89 | -- | -- | -- | 0.15 | 18.8 | -- | -- | -- | -- |
| 601.86 | 1.14 | 10.6 | -1.08 | -- | 1.55 | -- | -- | 0.336 | -- | 71.08 | 1324 | -- | -- |
| 199.93 | 0.659 | 10.7 | -- | 2.93 | 1.69 | -- | -- | 0.484 | 19.3 | 70.72 | 1215 | -- | -- |
| 693.34 | 1.23 | 10.7 | -1.41 | -- | -- | -- | -- | 0.0939 | -- | -- | -- | -- | -- |
| 304.99 | 0.817 | 10.7 | -- | 2.9 | -- | -- | -- | 0.3 | 18.8 | -- | -- | -- | -- |
| 631.74 | 1.17 | 10.6 | -- | -- | 1.67 | -- | -- | 0.456 | -- | 71 | 1328 | -- | -- |
| 745.62 | 1.27 | 10.6 | -- | -- | -- | -- | -- | 0.25 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 179.35 | humidity | 70 | 1440 | > th | dose independent | rect. | 18 | 20 |
| 2 | 179.54 | humidity | 60 | 1440 | > th | dose dependent | rect. | 7 | 7 |
| 14 | 181.21 | humidity | 90 | 1440 | < th | dose dependent | rect. | 7 | 7 |
| 15 | 181.38 | humidity | 60 | 1440 | > th | dose dependent | rect. | 10 | 3 |
| 19 | 181.61 | humidity | 80 | 1440 | < th | dose independent | rect. | 7 | 7 |
| 25 | 182.13 | humidity | 80 | 1440 | > th | dose independent | rect. | 7 | 7 |
| 33 | 182.52 | humidity | 80 | 1440 | < th | dose dependent | rect. | 17 | 21 |
| 36 | 182.62 | humidity | 70 | 1440 | < th | dose independent | rect. | 18 | 20 |
| 42 | 182.83 | humidity | 50 | 1440 | > th | dose dependent | rect. | 7 | 14 |
| 60 | 183.30 | humidity | 50 | 1440 | > th | dose dependent | sin | 1 | NA |
| 62 | 183.33 | humidity | 60 | 1440 | > th | dose dependent | rect. | 11 | 1 |
| 66 | 183.42 | humidity | 90 | 1440 | < th | dose dependent | rect. | 7 | 14 |
| 83 | 183.64 | humidity | 90 | 1440 | < th | dose dependent | sin | 1 | NA |
| 112 | 183.95 | humidity | 70 | 1440 | > th | dose independent | rect. | 13 | 23 |
| 140 | 184.17 | humidity | 70 | 1440 | > th | dose independent | rect. | 9 | 18 |
| 145 | 184.19 | humidity | 70 | 1440 | > th | dose independent | rect. | 9 | 16 |
| 152 | 184.22 | humidity | 70 | 1440 | > th | dose independent | rect. | 9 | 11 |
| 156 | 184.25 | humidity | 70 | 1440 | > th | dose independent | rect. | 9 | 14 |
| 249 | 184.73 | humidity | 80 | 1440 | < th | dose dependent | rect. | 13 | 23 |
| 317 | 184.96 | humidity | 70 | 1440 | > th | dose independent | rect. | 22 | 22 |
| 333 | 184.99 | humidity | 70 | 1440 | > th | dose independent | sin | 10 | NA |
| 337 | 184.99 | humidity | 80 | 1440 | < th | dose dependent | no | NA | NA |
| 338 | 185.00 | humidity | 70 | 1440 | > th | dose independent | no | NA | NA |
| 341 | 185.00 | humidity | 70 | 1440 | > th | dose independent | rect. | 2 | 23 |
| 356 | 185.03 | humidity | 70 | 1440 | > th | dose independent | rect. | 2 | 18 |
| 477 | 185.85 | humidity | 70 | 1440 | < th | dose independent | rect. | 9 | 11 |
| 516 | 186.03 | humidity | 80 | 1440 | < th | dose dependent | rect. | 11 | 23 |
| 636 | 186.84 | humidity | 70 | 1440 | < th | dose independent | no | NA | NA |
| 711 | 186.95 | humidity | 70 | 1440 | < th | dose independent | sin | 10 | NA |
| 728 | 187.07 | humidity | 70 | 14400 | < th | dose dependent | rect. | 17 | 2 |
| 741 | 187.16 | humidity | 70 | 1440 | > th | dose independent | rect. | 9 | 5 |
| 770 | 187.38 | humidity | 70 | 1440 | > th | dose independent | sin | 22 | NA |
| 792 | 187.56 | humidity | 70 | 14400 | < th | dose dependent | rect. | 17 | 15 |