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Os03g0725200

blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II

Description : Conserved hypothetical protein.


log2(Expression) ~ Norm(μ, σ2)

μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8

par. value (S.E.)
α : 7.96 (0.0966) R2 : 0.317
β1 : -2.23 (0.355) R2dD : 0.0571 R2D : 0.022
β2 : 1.54 (0.23) R2dC : 0.0594 R2C : 0.0553
β3 : -3 (0.248) R2dE : 0.234 R2E : 0.204
β4 : -- (--) R2dD*C : -- R2D*C : --
β5 : -- (--) R2dD*E : -- R2D*E : --
γ1 : -0.0875 (0.207) R2dN8 : 0.00015 R2N8 : 0.00034
σ : 1.8
deviance : 1500.36
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C
peak time of C : 0.94
E
wheather : atmosphere
threshold : 1002
memory length : 23
response mode : > th
dose dependency : dose independent
G
type of G : rect.
peak or start time of G : 20.1
open length of G : 22.6

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Dependence on each variable

Residual plot

Process of the parameter reduction
(fixed parameters. wheather = atmosphere, response mode = > th, dose dependency = dose independent, type of G = rect.)

deviance σ α β1 β2 β3 β4 β5 γ1 peak time of C threshold memory length peak or start time of G open length of G
1528.08 1.84 7.94 -2.09 1.37 -2.97 0.559 -1.08 -0.0725 0.904 1001 77 20 22.1
1517.04 1.81 7.92 -1.85 1.47 -3 0.964 -- -0.14 0.43 1002 45 20.1 22.4
1500.07 1.8 7.88 -1.96 1.48 -2.88 -- -1.68 -0.0076 0.595 1001 17 20.3 22.4
1500.36 1.8 7.96 -2.23 1.54 -3 -- -- -0.0875 0.94 1002 23 20.1 22.6
1620.7 1.89 7.91 -1.96 -- -2.83 -- -2 -0.0566 -- 1001 11 20.3 22.5
1946.97 2.07 8.02 -1.6 1.7 -- 0.929 -- -0.294 22.6 -- -- -- --
1950.51 2.07 8.03 -1.64 1.69 -- -- -- -0.297 22.6 -- -- -- --
1619.57 1.87 7.92 -2.05 -- -3.02 -- -- -0.0234 -- 1002 11 20.3 22.5
1613.78 1.87 7.9 -- 1.4 -2.85 -- -- 0.167 0.73 1002 15 20.2 22.6
2126.76 2.15 7.98 -1.61 -- -- -- -- -0.289 -- -- -- -- --
2021.54 2.1 7.98 -- 1.68 -- -- -- -0.114 22.6 -- -- -- --
1723.02 1.93 7.88 -- -- -2.82 -- -- 0.177 -- 1002 8 20.2 22.7
2195.12 2.19 7.94 -- -- -- -- -- -0.11 -- -- -- -- --

Results of the grid search

Summarized heatmap of deviance
 Histogram

Local optima within top1000 grid-points

rank deviance wheather threshold memory length response mode dose dependency type of G peak or start time of G open length of G
1 1540.84 atmosphere 1000 90 > th dose independent rect. 20 22
3 1567.40 humidity 80 14400 > th dose independent rect. 19 12
10 1583.97 humidity 80 14400 < th dose independent rect. 19 12
25 1598.75 humidity 80 14400 < th dose dependent rect. 19 12
38 1604.30 atmosphere 995 90 > th dose dependent rect. 20 22
60 1615.04 humidity 80 14400 > th dose independent sin 10 NA
64 1615.60 wind 1 43200 < th dose independent rect. 10 1
71 1618.27 humidity 80 14400 < th dose independent sin 10 NA
73 1618.87 wind 1 43200 > th dose independent rect. 10 2
77 1620.65 wind 9 14400 > th dose independent rect. 13 2
84 1623.11 wind 9 14400 > th dose dependent rect. 13 2
88 1623.63 wind 9 14400 < th dose independent rect. 13 2
109 1632.57 wind 1 43200 < th dose dependent rect. 10 1
110 1633.28 atmosphere 1015 90 < th dose dependent rect. 17 22
137 1642.67 humidity 80 14400 < th dose dependent rect. 4 1
141 1643.65 atmosphere 1015 90 < th dose dependent rect. 18 17
150 1646.63 wind 1 43200 > th dose independent rect. 9 4
153 1648.23 wind 1 43200 < th dose independent rect. 9 4
155 1648.71 humidity 80 14400 < th dose dependent rect. 1 4
162 1649.73 humidity 80 14400 < th dose dependent rect. 1 1
189 1654.17 atmosphere 1015 270 < th dose dependent rect. 15 22
238 1660.77 wind 1 43200 < th dose dependent rect. 9 3
306 1670.68 humidity 80 14400 > th dose independent rect. 23 2
348 1676.53 wind 7 14400 > th dose dependent rect. 15 1
359 1678.10 wind 1 43200 > th dose independent rect. 18 4
376 1680.00 atmosphere 1010 14400 > th dose independent rect. 24 6
403 1681.73 atmosphere 1015 90 < th dose dependent rect. 18 15
406 1681.95 wind 1 43200 > th dose independent rect. 18 7
413 1682.33 atmosphere 1010 14400 > th dose independent rect. 4 2
422 1682.99 atmosphere 1010 14400 < th dose independent rect. 24 5
429 1683.20 atmosphere 1010 14400 < th dose independent rect. 24 3
431 1683.29 wind 1 43200 < th dose independent rect. 18 7
442 1683.93 atmosphere 1000 720 > th dose independent rect. 13 19
458 1684.89 atmosphere 1010 14400 < th dose independent rect. 4 1
463 1685.15 wind 9 14400 > th dose dependent rect. 13 7
468 1685.41 wind 1 43200 < th dose independent rect. 18 5
539 1689.36 wind 1 43200 < th dose independent rect. 16 11
594 1692.28 radiation 10 14400 < th dose independent rect. 6 1
608 1692.91 wind 1 43200 < th dose dependent rect. 18 7
612 1693.42 wind 1 43200 < th dose independent rect. 20 5
615 1693.74 temperature 30 1440 < th dose independent rect. 10 2
616 1693.74 radiation 10 14400 < th dose independent rect. 1 6
618 1693.76 radiation 10 14400 < th dose independent rect. 21 10
619 1693.79 radiation 10 14400 < th dose independent rect. 23 8
636 1694.36 wind 1 43200 < th dose independent rect. 21 2
645 1694.69 wind 1 43200 < th dose dependent rect. 16 9
687 1696.64 wind 1 43200 < th dose dependent rect. 18 5
725 1698.07 atmosphere 1000 270 > th dose independent rect. 20 11
756 1699.27 temperature 25 4320 > th dose dependent rect. 23 1
762 1699.41 temperature 30 1440 > th dose independent rect. 10 2
770 1699.76 temperature 30 1440 < th dose independent rect. 2 10
771 1699.91 temperature 30 1440 < th dose independent rect. 4 8
773 1699.96 wind 1 43200 > th dose independent rect. 20 2
795 1700.73 humidity 80 14400 > th dose independent rect. 4 2
796 1700.74 wind 1 43200 < th dose dependent rect. 13 12
797 1700.77 temperature 30 1440 < th dose independent rect. 19 17
808 1701.23 wind 1 43200 > th dose independent rect. 16 11
813 1701.31 wind 3 43200 < th dose dependent rect. 21 1
824 1701.69 atmosphere 1000 10 > th dose independent rect. 17 23
831 1701.85 humidity 80 14400 < th dose independent rect. 3 3
832 1701.85 temperature 30 1440 < th dose independent rect. 6 6
842 1702.16 humidity 80 14400 < th dose independent rect. 4 1
871 1703.08 wind 5 43200 < th dose dependent rect. 13 1
880 1703.31 atmosphere 1010 14400 > th dose independent sin 10 NA
888 1703.53 temperature 25 43200 > th dose independent rect. 21 1
892 1703.72 temperature 30 1440 < th dose independent rect. 22 14
907 1704.00 wind 1 43200 < th dose dependent rect. 20 5
909 1704.01 temperature 25 43200 < th dose independent rect. 21 1
926 1704.37 radiation 40 14400 > th dose dependent rect. 12 1
952 1705.13 atmosphere 1000 720 > th dose independent rect. 11 15
994 1706.37 wind 9 14400 > th dose dependent rect. 24 15
999 1706.47 atmosphere 1000 720 > th dose independent rect. 20 5