Os03g0725000
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Similar to Mitochondrial 60S ribosomal protein L6.
FiT-DB / Search/ Help/ Sample detail
|
Os03g0725000 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
|
Description : Similar to Mitochondrial 60S ribosomal protein L6.
|
|
log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
|
_____ |
|
__
Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = temperature,
response mode = > th, dose dependency = dose dependent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 37.9 | 0.289 | 10.2 | -0.927 | 0.456 | 0.366 | 0.29 | -7.35 | -0.179 | 18.1 | 29.4 | 1215 | -- | -- |
| 40.71 | 0.297 | 10.1 | 0.378 | 0.471 | -0.458 | 0.204 | -- | -0.119 | 18.2 | 29.96 | 1225 | -- | -- |
| 38.1 | 0.287 | 10.2 | -0.928 | 0.458 | 0.369 | -- | -7.39 | -0.175 | 18 | 29.46 | 1214 | -- | -- |
| 40.87 | 0.298 | 10.1 | 0.372 | 0.474 | -0.459 | -- | -- | -0.141 | 18.1 | 29.9 | 1234 | -- | -- |
| 48.82 | 0.325 | 10.3 | -1.13 | -- | 0.469 | -- | -8.43 | -0.193 | -- | 29.53 | 1238 | -- | -- |
| 50.59 | 0.333 | 10.1 | 0.254 | 0.499 | -- | 0.39 | -- | -0.0547 | 17.6 | -- | -- | -- | -- |
| 50.97 | 0.334 | 10.1 | 0.252 | 0.502 | -- | -- | -- | -0.0531 | 17.6 | -- | -- | -- | -- |
| 52.44 | 0.337 | 10.1 | 0.369 | -- | -0.481 | -- | -- | -0.156 | -- | 29.86 | 1265 | -- | -- |
| 44.38 | 0.31 | 10.1 | -- | 0.471 | -0.406 | -- | -- | -0.172 | 18.1 | 30.3 | 1231 | -- | -- |
| 64.05 | 0.374 | 10.1 | 0.236 | -- | -- | -- | -- | -0.0652 | -- | -- | -- | -- | -- |
| 52.64 | 0.339 | 10.1 | -- | 0.498 | -- | -- | -- | -0.0811 | 17.6 | -- | -- | -- | -- |
| 55.86 | 0.348 | 10.1 | -- | -- | -0.431 | -- | -- | -0.187 | -- | 30.2 | 1257 | -- | -- |
| 65.51 | 0.378 | 10.1 | -- | -- | -- | -- | -- | -0.0913 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
|
Histogram 
|
Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 39.07 | temperature | 30 | 1440 | > th | dose dependent | rect. | 16 | 22 |
| 3 | 39.09 | temperature | 30 | 1440 | < th | dose independent | rect. | 18 | 18 |
| 4 | 39.10 | temperature | 30 | 1440 | > th | dose dependent | rect. | 10 | 9 |
| 37 | 39.12 | temperature | 30 | 1440 | > th | dose independent | rect. | 17 | 21 |
| 38 | 39.12 | temperature | 30 | 1440 | > th | dose dependent | sin | 20 | NA |
| 41 | 39.12 | temperature | 30 | 1440 | > th | dose dependent | no | NA | NA |
| 191 | 39.15 | temperature | 30 | 1440 | > th | dose dependent | rect. | 13 | 1 |
| 223 | 39.20 | temperature | 30 | 1440 | < th | dose independent | sin | 10 | NA |
| 229 | 39.22 | temperature | 30 | 1440 | > th | dose independent | sin | 10 | NA |
| 289 | 39.26 | temperature | 25 | 720 | > th | dose dependent | rect. | 18 | 14 |
| 307 | 39.31 | temperature | 30 | 1440 | > th | dose dependent | sin | 10 | NA |
| 358 | 39.48 | temperature | 30 | 1440 | > th | dose independent | rect. | 16 | 3 |
| 409 | 39.51 | temperature | 30 | 1440 | < th | dose independent | rect. | 9 | 3 |
| 410 | 39.51 | temperature | 30 | 1440 | < th | dose independent | rect. | 4 | 8 |
| 411 | 39.52 | temperature | 30 | 1440 | > th | dose independent | rect. | 9 | 5 |
| 416 | 39.53 | temperature | 30 | 1440 | < th | dose independent | rect. | 16 | 5 |
| 418 | 39.53 | temperature | 25 | 4320 | > th | dose dependent | rect. | 22 | 1 |
| 443 | 39.55 | temperature | 30 | 1440 | < th | dose independent | rect. | 22 | 14 |
| 444 | 39.55 | temperature | 30 | 1440 | < th | dose independent | rect. | 20 | 16 |
| 448 | 39.56 | temperature | 30 | 1440 | < th | dose independent | rect. | 16 | 3 |
| 458 | 39.58 | temperature | 30 | 1440 | < th | dose independent | rect. | 16 | 13 |
| 461 | 39.59 | temperature | 30 | 1440 | > th | dose independent | rect. | 9 | 3 |
| 547 | 39.71 | temperature | 30 | 1440 | > th | dose independent | rect. | 9 | 10 |
| 568 | 39.72 | temperature | 30 | 1440 | > th | dose independent | no | NA | NA |
| 723 | 39.82 | temperature | 30 | 1440 | > th | dose independent | rect. | 11 | 23 |
| 747 | 39.84 | temperature | 30 | 1440 | < th | dose independent | rect. | 11 | 1 |
| 905 | 40.04 | temperature | 30 | 1440 | < th | dose independent | no | NA | NA |
| 908 | 40.04 | temperature | 30 | 1440 | < th | dose independent | rect. | 7 | 12 |
| 916 | 40.04 | temperature | 30 | 1440 | < th | dose independent | rect. | 4 | 15 |
| 951 | 40.04 | temperature | 30 | 1440 | < th | dose independent | rect. | 8 | 21 |
| 967 | 40.04 | temperature | 30 | 1440 | < th | dose independent | rect. | 20 | 23 |