Os03g0724300
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Protein kinase domain containing protein.
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Os03g0724300 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Protein kinase domain containing protein.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = radiation,
response mode = < th, dose dependency = dose dependent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 202.41 | 0.668 | 8.95 | 0.83 | 0.989 | -1.58 | -0.535 | 0.267 | -0.461 | 10.9 | 6.686 | 15 | -- | -- |
| 200.51 | 0.665 | 8.94 | 0.833 | 0.979 | -1.58 | -0.797 | -- | -0.413 | 11.2 | 6.608 | 14 | -- | -- |
| 199.91 | 0.664 | 8.95 | 0.81 | 0.98 | -1.58 | -- | 0.723 | -0.415 | 11.4 | 6.58 | 14 | -- | -- |
| 203.13 | 0.668 | 8.95 | 0.801 | 1 | -1.56 | -- | -- | -0.414 | 11.3 | 6.58 | 14 | -- | -- |
| 210.73 | 0.68 | 8.97 | 0.801 | -- | -2.28 | -- | 0.785 | -0.44 | -- | 6.58 | 14 | -- | -- |
| 244.87 | 0.734 | 8.9 | 0.844 | 2.8 | -- | -0.699 | -- | -0.355 | 11.5 | -- | -- | -- | -- |
| 246.97 | 0.736 | 8.9 | 0.816 | 2.8 | -- | -- | -- | -0.358 | 11.5 | -- | -- | -- | -- |
| 214.48 | 0.685 | 8.97 | 0.789 | -- | -2.28 | -- | -- | -0.444 | -- | 6.436 | 23 | -- | -- |
| 219.94 | 0.694 | 8.97 | -- | 0.979 | -1.58 | -- | -- | -0.508 | 11.3 | 6.261 | 14 | -- | -- |
| 738.95 | 1.27 | 8.96 | 0.741 | -- | -- | -- | -- | -0.388 | -- | -- | -- | -- | -- |
| 264.52 | 0.761 | 8.92 | -- | 2.79 | -- | -- | -- | -0.448 | 11.5 | -- | -- | -- | -- |
| 230.8 | 0.71 | 9 | -- | -- | -2.27 | -- | -- | -0.535 | -- | 6.261 | 14 | -- | -- |
| 753.43 | 1.28 | 8.98 | -- | -- | -- | -- | -- | -0.47 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 193.49 | radiation | 10.0 | 10 | < th | dose dependent | sin | 6 | NA |
| 8 | 197.01 | radiation | 1.0 | 30 | > th | dose independent | sin | 4 | NA |
| 21 | 199.81 | radiation | 10.0 | 10 | < th | dose dependent | rect. | 24 | 16 |
| 25 | 200.17 | radiation | 1.0 | 30 | < th | dose independent | sin | 4 | NA |
| 29 | 200.77 | radiation | 10.0 | 30 | < th | dose dependent | rect. | 19 | 23 |
| 34 | 201.25 | radiation | 1.0 | 90 | < th | dose independent | rect. | 21 | 22 |
| 35 | 201.29 | radiation | 1.0 | 90 | < th | dose independent | rect. | 23 | 19 |
| 37 | 201.68 | radiation | 10.0 | 90 | < th | dose dependent | rect. | 23 | 18 |
| 61 | 203.36 | radiation | 10.0 | 30 | < th | dose dependent | rect. | 21 | 21 |
| 70 | 203.99 | radiation | 10.0 | 10 | < th | dose dependent | rect. | 21 | 23 |
| 78 | 204.39 | radiation | 10.0 | 10 | < th | dose dependent | rect. | 7 | 23 |
| 98 | 205.12 | radiation | 1.0 | 90 | < th | dose independent | rect. | 19 | 23 |
| 105 | 205.43 | humidity | 50.0 | 30 | > th | dose dependent | rect. | 13 | 16 |
| 156 | 207.56 | radiation | 1.0 | 10 | > th | dose dependent | sin | 10 | NA |
| 162 | 207.79 | radiation | 10.0 | 10 | < th | dose dependent | rect. | 13 | 23 |
| 166 | 207.81 | radiation | 10.0 | 10 | < th | dose dependent | no | NA | NA |
| 171 | 207.92 | radiation | 10.0 | 10 | < th | dose dependent | rect. | 11 | 23 |
| 181 | 208.08 | radiation | 10.0 | 10 | < th | dose dependent | rect. | 9 | 23 |
| 184 | 208.13 | radiation | 10.0 | 10 | < th | dose dependent | rect. | 15 | 23 |
| 208 | 208.87 | temperature | 30.0 | 90 | < th | dose independent | rect. | 13 | 16 |
| 214 | 209.01 | radiation | 1.0 | 10 | > th | dose independent | rect. | 17 | 20 |
| 249 | 209.72 | humidity | 70.0 | 10 | > th | dose independent | rect. | 12 | 17 |
| 252 | 209.78 | radiation | 1.0 | 10 | > th | dose independent | rect. | 17 | 23 |
| 255 | 209.82 | temperature | 30.0 | 270 | < th | dose independent | rect. | 11 | 16 |
| 258 | 209.84 | radiation | 40.0 | 270 | < th | dose dependent | rect. | 11 | 16 |
| 277 | 210.22 | radiation | 40.0 | 90 | < th | dose dependent | rect. | 11 | 18 |
| 280 | 210.24 | radiation | 40.0 | 10 | < th | dose dependent | rect. | 12 | 17 |
| 313 | 210.66 | radiation | 1.0 | 90 | > th | dose independent | rect. | 16 | 23 |
| 315 | 210.67 | atmosphere | 995.0 | 43200 | < th | dose dependent | rect. | 13 | 12 |
| 330 | 210.86 | temperature | 10.0 | 10 | > th | dose dependent | rect. | 5 | 19 |
| 366 | 211.12 | atmosphere | 995.0 | 43200 | > th | dose independent | rect. | 22 | 18 |
| 371 | 211.15 | atmosphere | 995.0 | 43200 | < th | dose independent | rect. | 18 | 22 |
| 384 | 211.26 | atmosphere | 995.0 | 43200 | > th | dose independent | rect. | 19 | 21 |
| 394 | 211.33 | radiation | 1.0 | 90 | > th | dose independent | no | NA | NA |
| 395 | 211.33 | radiation | 1.0 | 90 | > th | dose independent | rect. | 4 | 15 |
| 440 | 211.34 | radiation | 1.0 | 90 | < th | dose independent | no | NA | NA |
| 442 | 211.35 | radiation | 1.0 | 90 | < th | dose independent | rect. | 9 | 23 |
| 443 | 211.37 | radiation | 1.0 | 90 | < th | dose independent | rect. | 11 | 23 |
| 449 | 211.39 | atmosphere | 995.0 | 43200 | < th | dose independent | rect. | 22 | 19 |
| 455 | 211.44 | radiation | 1.0 | 30 | > th | dose independent | rect. | 5 | 8 |
| 491 | 211.58 | radiation | 20.0 | 4320 | > th | dose independent | rect. | 7 | 1 |
| 492 | 211.58 | humidity | 80.0 | 1440 | < th | dose dependent | rect. | 11 | 2 |
| 531 | 211.80 | radiation | 1.0 | 90 | < th | dose independent | rect. | 15 | 23 |
| 581 | 212.24 | radiation | 20.0 | 4320 | > th | dose dependent | rect. | 7 | 1 |
| 589 | 212.31 | radiation | 10.0 | 30 | < th | dose dependent | rect. | 17 | 23 |
| 591 | 212.32 | humidity | 50.0 | 270 | > th | dose independent | rect. | 10 | 17 |
| 594 | 212.34 | humidity | 50.0 | 1440 | > th | dose dependent | rect. | 11 | 2 |
| 625 | 212.62 | humidity | 80.0 | 1440 | < th | dose dependent | rect. | 6 | 8 |
| 659 | 212.77 | radiation | 20.0 | 30 | < th | dose independent | rect. | 10 | 19 |
| 661 | 212.78 | atmosphere | 995.0 | 43200 | > th | dose independent | sin | 3 | NA |
| 663 | 212.78 | precipitation | 0.1 | 270 | < th | dose independent | rect. | 3 | 20 |
| 665 | 212.78 | precipitation | 0.1 | 270 | < th | dose dependent | rect. | 3 | 20 |
| 669 | 212.82 | atmosphere | 995.0 | 43200 | < th | dose independent | rect. | 7 | 20 |
| 670 | 212.82 | atmosphere | 995.0 | 43200 | < th | dose independent | rect. | 3 | 21 |
| 729 | 213.02 | radiation | 1.0 | 30 | < th | dose independent | rect. | 7 | 23 |
| 753 | 213.11 | temperature | 20.0 | 270 | > th | dose independent | rect. | 23 | 3 |
| 772 | 213.16 | radiation | 1.0 | 90 | < th | dose independent | rect. | 17 | 23 |
| 851 | 213.24 | radiation | 1.0 | 270 | > th | dose dependent | rect. | 5 | 1 |
| 855 | 213.28 | radiation | 1.0 | 270 | > th | dose independent | rect. | 18 | 12 |
| 903 | 213.48 | atmosphere | 995.0 | 43200 | < th | dose independent | no | NA | NA |
| 938 | 213.65 | atmosphere | 995.0 | 43200 | > th | dose independent | rect. | 1 | 20 |
| 955 | 213.71 | atmosphere | 995.0 | 43200 | < th | dose independent | sin | 2 | NA |
| 957 | 213.71 | atmosphere | 995.0 | 43200 | > th | dose independent | rect. | 7 | 19 |
| 974 | 213.79 | radiation | 30.0 | 1440 | < th | dose independent | rect. | 15 | 19 |
| 984 | 213.82 | humidity | 60.0 | 1440 | > th | dose independent | rect. | 2 | 14 |