Os03g0722700
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Similar to SWI2/SNF2-like protein (Fragment).
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Os03g0722700 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Similar to SWI2/SNF2-like protein (Fragment).
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = humidity,
response mode = < th, dose dependency = dose independent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 144.5 | 0.565 | 8.23 | 0.3 | 0.701 | 0.993 | 0.932 | 0.44 | -0.705 | 15.5 | 68.48 | 7332 | -- | -- |
| 144.78 | 0.56 | 8.22 | 0.283 | 0.696 | 1.02 | 0.933 | -- | -0.71 | 15.5 | 68.62 | 7323 | -- | -- |
| 147.15 | 0.565 | 8.22 | 0.3 | 0.711 | 0.973 | -- | 0.417 | -0.702 | 15.4 | 68.93 | 7323 | -- | -- |
| 147.26 | 0.565 | 8.23 | 0.283 | 0.692 | 0.943 | -- | -- | -0.734 | 15.4 | 69.99 | 7322 | -- | -- |
| 169.44 | 0.61 | 8.18 | 0.133 | -- | 0.477 | -- | 0.523 | -0.576 | -- | 70 | 7608 | -- | -- |
| 161.2 | 0.595 | 8.2 | 0.159 | 0.711 | -- | 0.799 | -- | -0.591 | 15.5 | -- | -- | -- | -- |
| 163.14 | 0.598 | 8.19 | 0.173 | 0.713 | -- | -- | -- | -0.586 | 15.4 | -- | -- | -- | -- |
| 170.83 | 0.611 | 8.19 | 0.119 | -- | 0.483 | -- | -- | -0.578 | -- | 70 | 7608 | -- | -- |
| 149.24 | 0.569 | 8.24 | -- | 0.697 | 0.926 | -- | -- | -0.775 | 15.4 | 69.84 | 7317 | -- | -- |
| 191.76 | 0.647 | 8.19 | 0.143 | -- | -- | -- | -- | -0.605 | -- | -- | -- | -- | -- |
| 163.94 | 0.599 | 8.2 | -- | 0.71 | -- | -- | -- | -0.605 | 15.4 | -- | -- | -- | -- |
| 171.2 | 0.611 | 8.19 | -- | -- | 0.484 | -- | -- | -0.591 | -- | 70 | 7608 | -- | -- |
| 192.31 | 0.647 | 8.2 | -- | -- | -- | -- | -- | -0.621 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 142.33 | precipitation | 0.1 | 14400 | > th | dose dependent | rect. | 4 | 1 |
| 2 | 142.53 | precipitation | 0.1 | 14400 | > th | dose independent | rect. | 4 | 1 |
| 3 | 142.84 | precipitation | 0.1 | 14400 | < th | dose independent | rect. | 4 | 1 |
| 4 | 142.84 | precipitation | 0.1 | 14400 | < th | dose dependent | rect. | 4 | 1 |
| 5 | 143.01 | wind | 1.0 | 14400 | > th | dose independent | rect. | 1 | 2 |
| 8 | 143.46 | wind | 1.0 | 14400 | < th | dose independent | rect. | 1 | 2 |
| 13 | 144.18 | wind | 1.0 | 14400 | < th | dose dependent | rect. | 6 | 1 |
| 14 | 144.38 | wind | 3.0 | 14400 | < th | dose dependent | rect. | 24 | 3 |
| 20 | 144.78 | humidity | 60.0 | 14400 | > th | dose independent | rect. | 15 | 1 |
| 21 | 144.94 | humidity | 70.0 | 14400 | > th | dose independent | rect. | 17 | 1 |
| 22 | 144.97 | wind | 1.0 | 43200 | > th | dose independent | rect. | 7 | 2 |
| 24 | 145.00 | precipitation | 0.1 | 4320 | < th | dose independent | rect. | 24 | 18 |
| 25 | 145.00 | precipitation | 0.1 | 4320 | < th | dose dependent | rect. | 24 | 18 |
| 29 | 145.06 | precipitation | 0.1 | 4320 | > th | dose independent | rect. | 1 | 17 |
| 31 | 145.07 | humidity | 90.0 | 4320 | > th | dose dependent | rect. | 7 | 1 |
| 32 | 145.13 | wind | 1.0 | 14400 | > th | dose independent | rect. | 24 | 9 |
| 34 | 145.18 | humidity | 90.0 | 14400 | > th | dose dependent | rect. | 9 | 1 |
| 35 | 145.21 | humidity | 90.0 | 4320 | > th | dose dependent | rect. | 6 | 4 |
| 37 | 145.22 | humidity | 50.0 | 14400 | > th | dose dependent | rect. | 8 | 1 |
| 52 | 145.50 | humidity | 90.0 | 14400 | < th | dose dependent | rect. | 8 | 1 |
| 55 | 145.57 | wind | 1.0 | 14400 | < th | dose independent | rect. | 24 | 8 |
| 60 | 145.64 | humidity | 60.0 | 14400 | > th | dose independent | rect. | 13 | 21 |
| 62 | 145.65 | humidity | 60.0 | 14400 | < th | dose dependent | rect. | 13 | 1 |
| 69 | 145.70 | humidity | 60.0 | 14400 | > th | dose independent | rect. | 15 | 18 |
| 80 | 145.77 | precipitation | 0.1 | 14400 | > th | dose dependent | rect. | 2 | 16 |
| 83 | 145.81 | precipitation | 0.1 | 4320 | > th | dose dependent | rect. | 24 | 19 |
| 90 | 145.87 | humidity | 60.0 | 14400 | < th | dose independent | rect. | 13 | 22 |
| 96 | 145.94 | humidity | 60.0 | 14400 | > th | dose independent | rect. | 20 | 21 |
| 101 | 145.96 | humidity | 60.0 | 14400 | > th | dose independent | rect. | 5 | 12 |
| 111 | 145.96 | humidity | 60.0 | 14400 | > th | dose independent | rect. | 23 | 19 |
| 141 | 146.03 | humidity | 70.0 | 14400 | < th | dose dependent | rect. | 12 | 22 |
| 144 | 146.04 | humidity | 70.0 | 14400 | < th | dose dependent | rect. | 20 | 21 |
| 157 | 146.08 | humidity | 70.0 | 14400 | < th | dose dependent | rect. | 7 | 10 |
| 173 | 146.09 | humidity | 70.0 | 14400 | < th | dose dependent | rect. | 12 | 5 |
| 176 | 146.10 | humidity | 60.0 | 14400 | > th | dose independent | rect. | 6 | 16 |
| 204 | 146.10 | humidity | 60.0 | 14400 | > th | dose independent | rect. | 23 | 23 |
| 206 | 146.11 | humidity | 60.0 | 14400 | > th | dose independent | no | NA | NA |
| 241 | 146.12 | humidity | 60.0 | 14400 | > th | dose independent | rect. | 13 | 9 |
| 242 | 146.12 | humidity | 60.0 | 14400 | > th | dose independent | rect. | 13 | 11 |
| 258 | 146.13 | wind | 1.0 | 14400 | < th | dose independent | rect. | 22 | 10 |
| 263 | 146.13 | humidity | 60.0 | 14400 | > th | dose independent | rect. | 13 | 15 |
| 268 | 146.13 | humidity | 60.0 | 14400 | > th | dose independent | rect. | 10 | 23 |
| 295 | 146.16 | humidity | 60.0 | 14400 | < th | dose independent | rect. | 20 | 22 |
| 313 | 146.18 | humidity | 60.0 | 14400 | < th | dose independent | rect. | 7 | 11 |
| 356 | 146.21 | humidity | 60.0 | 14400 | > th | dose independent | sin | 21 | NA |
| 396 | 146.24 | humidity | 60.0 | 14400 | < th | dose independent | rect. | 15 | 23 |
| 466 | 146.31 | humidity | 60.0 | 14400 | < th | dose independent | sin | 2 | NA |
| 483 | 146.32 | humidity | 60.0 | 14400 | < th | dose independent | no | NA | NA |
| 566 | 146.33 | humidity | 70.0 | 14400 | < th | dose dependent | sin | 1 | NA |
| 599 | 146.36 | humidity | 70.0 | 14400 | > th | dose independent | rect. | 20 | 14 |
| 606 | 146.36 | humidity | 60.0 | 14400 | < th | dose independent | rect. | 10 | 23 |
| 616 | 146.37 | humidity | 70.0 | 14400 | < th | dose independent | rect. | 20 | 14 |
| 619 | 146.37 | humidity | 70.0 | 14400 | < th | dose dependent | no | NA | NA |
| 625 | 146.37 | humidity | 70.0 | 14400 | < th | dose dependent | rect. | 6 | 16 |
| 662 | 146.38 | humidity | 60.0 | 14400 | < th | dose independent | rect. | 13 | 5 |
| 759 | 146.41 | humidity | 70.0 | 14400 | < th | dose dependent | rect. | 15 | 23 |
| 848 | 146.50 | humidity | 70.0 | 14400 | > th | dose independent | rect. | 17 | 16 |
| 882 | 146.53 | wind | 1.0 | 14400 | < th | dose dependent | rect. | 1 | 7 |
| 883 | 146.53 | humidity | 90.0 | 4320 | > th | dose dependent | rect. | 6 | 7 |
| 893 | 146.54 | humidity | 60.0 | 14400 | < th | dose independent | rect. | 13 | 9 |
| 959 | 146.57 | wind | 7.0 | 14400 | < th | dose dependent | rect. | 7 | 1 |
| 978 | 146.59 | humidity | 70.0 | 14400 | < th | dose independent | rect. | 17 | 1 |
| 979 | 146.59 | humidity | 70.0 | 14400 | < th | dose independent | rect. | 7 | 3 |
| 987 | 146.59 | precipitation | 0.1 | 14400 | > th | dose dependent | rect. | 13 | 7 |