Os03g0722400
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Similar to DOMINO B.
FiT-DB / Search/ Help/ Sample detail
|
Os03g0722400 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
|
Description : Similar to DOMINO B.
|
|
log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
|
_____ |
|
__
Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = temperature,
response mode = > th, dose dependency = dose dependent, type of G = sin)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 171.87 | 0.616 | 8.39 | 0.918 | 3.24 | 2.63 | 0.338 | 0.303 | -0.368 | 21.1 | 19.53 | 121 | 19.8 | -- |
| 171.45 | 0.61 | 8.39 | 0.866 | 3.23 | 2.71 | 0.229 | -- | -0.384 | 21.2 | 19.09 | 158 | 20 | -- |
| 171.86 | 0.611 | 8.38 | 0.9 | 3.26 | 2.66 | -- | 0.298 | -0.352 | 21.2 | 19.03 | 151 | 20 | -- |
| 171.58 | 0.61 | 8.4 | 0.874 | 3.22 | 2.66 | -- | -- | -0.382 | 21.2 | 19.2 | 159 | 20.1 | -- |
| 221.15 | 0.693 | 8.28 | 0.9 | -- | 3.32 | -- | -0.663 | -0.294 | -- | -7.431 | 881 | 18.3 | -- |
| 243.52 | 0.732 | 8.32 | 1.3 | 2.6 | -- | 0.182 | -- | -0.115 | 19.4 | -- | -- | -- | -- |
| 243.61 | 0.731 | 8.31 | 1.29 | 2.61 | -- | -- | -- | -0.115 | 19.4 | -- | -- | -- | -- |
| 219.62 | 0.69 | 8.29 | 0.887 | -- | 3.37 | -- | -- | -0.324 | -- | -19.89 | 1035 | 19.6 | -- |
| 190.83 | 0.643 | 8.4 | -- | 3.27 | 2.77 | -- | -- | -0.458 | 21.2 | 19.13 | 176 | 20.4 | -- |
| 605 | 1.15 | 8.25 | 1.25 | -- | -- | -- | -- | -0.158 | -- | -- | -- | -- | -- |
| 287.54 | 0.793 | 8.35 | -- | 2.59 | -- | -- | -- | -0.259 | 19.4 | -- | -- | -- | -- |
| 238.58 | 0.719 | 8.32 | -- | -- | 3.58 | -- | -- | -0.471 | -- | -16.01 | 1085 | 20.1 | -- |
| 646.12 | 1.19 | 8.29 | -- | -- | -- | -- | -- | -0.296 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
|
Histogram 
|
Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 169.90 | temperature | 30 | 270 | < th | dose dependent | rect. | 3 | 13 |
| 8 | 173.35 | temperature | 20 | 90 | > th | dose dependent | sin | 1 | NA |
| 12 | 174.14 | temperature | 25 | 270 | > th | dose dependent | sin | 6 | NA |
| 30 | 176.47 | temperature | 30 | 270 | < th | dose dependent | sin | 3 | NA |
| 39 | 177.14 | temperature | 30 | 90 | < th | dose dependent | rect. | 6 | 11 |
| 41 | 177.22 | temperature | 25 | 270 | > th | dose dependent | rect. | 1 | 11 |
| 43 | 177.38 | temperature | 25 | 270 | > th | dose dependent | rect. | 6 | 6 |
| 50 | 177.70 | temperature | 30 | 90 | < th | dose dependent | rect. | 6 | 13 |
| 61 | 178.37 | temperature | 30 | 90 | < th | dose dependent | sin | 0 | NA |
| 134 | 181.23 | temperature | 20 | 10 | > th | dose dependent | rect. | 9 | 12 |
| 177 | 182.75 | temperature | 25 | 270 | > th | dose dependent | rect. | 17 | 21 |
| 211 | 183.53 | temperature | 30 | 720 | < th | dose dependent | rect. | 4 | 7 |
| 234 | 184.05 | temperature | 25 | 10 | > th | dose dependent | rect. | 9 | 20 |
| 287 | 184.76 | temperature | 30 | 720 | < th | dose dependent | rect. | 5 | 4 |
| 369 | 185.93 | temperature | 25 | 270 | < th | dose independent | rect. | 3 | 10 |
| 411 | 186.65 | temperature | 25 | 720 | > th | dose independent | rect. | 7 | 4 |
| 463 | 187.45 | temperature | 25 | 270 | < th | dose independent | rect. | 3 | 16 |
| 501 | 187.90 | temperature | 25 | 270 | > th | dose independent | sin | 2 | NA |
| 674 | 189.82 | temperature | 25 | 270 | < th | dose independent | sin | 2 | NA |
| 745 | 190.53 | temperature | 25 | 10 | > th | dose dependent | rect. | 4 | 18 |
| 890 | 191.31 | temperature | 25 | 10 | > th | dose dependent | no | NA | NA |
| 953 | 191.64 | temperature | 30 | 10 | < th | dose dependent | rect. | 6 | 6 |