Os03g0720800
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Similar to MYB transcription factor R2R3 type.
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Os03g0720800 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Similar to MYB transcription factor R2R3 type.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = atmosphere,
response mode = < th, dose dependency = dose dependent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 86.23 | 0.436 | 8.38 | 0.734 | 0.694 | -0.0707 | -0.00162 | -3.71 | 0.364 | 22.5 | 1005 | 9 | -- | -- |
| 89.64 | 0.444 | 8.36 | 0.865 | 0.683 | -0.887 | 0.0474 | -- | 0.342 | 22.6 | 1001 | 36 | -- | -- |
| 86.19 | 0.436 | 8.38 | 0.731 | 0.694 | -0.0599 | -- | -3.78 | 0.365 | 22.5 | 1005 | 5 | -- | -- |
| 89.65 | 0.444 | 8.36 | 0.863 | 0.682 | -0.888 | -- | -- | 0.341 | 22.6 | 1001 | 34 | -- | -- |
| 115.61 | 0.501 | 8.36 | 0.769 | -- | -0.179 | -- | -3.1 | 0.356 | -- | 1006 | 5 | -- | -- |
| 96.92 | 0.462 | 8.36 | 0.786 | 0.686 | -- | 0.0523 | -- | 0.372 | 22.6 | -- | -- | -- | -- |
| 96.93 | 0.461 | 8.36 | 0.784 | 0.686 | -- | -- | -- | 0.372 | 22.6 | -- | -- | -- | -- |
| 118.24 | 0.506 | 8.35 | 0.878 | -- | -0.857 | -- | -- | 0.341 | -- | 1001 | 2 | -- | -- |
| 108.82 | 0.489 | 8.38 | -- | 0.689 | -0.683 | -- | -- | 0.255 | 22.7 | 1000 | 46 | -- | -- |
| 125.88 | 0.524 | 8.34 | 0.797 | -- | -- | -- | -- | 0.375 | -- | -- | -- | -- | -- |
| 113.14 | 0.498 | 8.38 | -- | 0.691 | -- | -- | -- | 0.285 | 22.7 | -- | -- | -- | -- |
| 138.08 | 0.549 | 8.36 | -- | -- | -0.695 | -- | -- | 0.256 | -- | 1001 | 3 | -- | -- |
| 142.63 | 0.557 | 8.36 | -- | -- | -- | -- | -- | 0.287 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 83.58 | atmosphere | 1005 | 10 | < th | dose dependent | rect. | 10 | 19 |
| 32 | 84.87 | atmosphere | 1015 | 90 | < th | dose dependent | rect. | 9 | 20 |
| 39 | 84.98 | atmosphere | 1015 | 270 | < th | dose dependent | rect. | 9 | 18 |
| 41 | 84.99 | atmosphere | 995 | 270 | > th | dose dependent | rect. | 13 | 20 |
| 63 | 85.26 | atmosphere | 1000 | 270 | < th | dose independent | rect. | 9 | 17 |
| 65 | 85.27 | atmosphere | 1000 | 270 | > th | dose independent | rect. | 13 | 20 |
| 73 | 85.32 | atmosphere | 1000 | 90 | > th | dose independent | rect. | 13 | 23 |
| 80 | 85.41 | atmosphere | 995 | 270 | > th | dose dependent | rect. | 13 | 8 |
| 88 | 85.47 | atmosphere | 995 | 90 | > th | dose dependent | rect. | 15 | 18 |
| 114 | 85.62 | atmosphere | 995 | 10 | > th | dose dependent | rect. | 15 | 19 |
| 165 | 85.91 | atmosphere | 1005 | 10 | < th | dose dependent | sin | 16 | NA |
| 184 | 86.00 | atmosphere | 1005 | 270 | > th | dose independent | rect. | 14 | 6 |
| 185 | 86.00 | atmosphere | 1000 | 270 | > th | dose independent | rect. | 13 | 10 |
| 199 | 86.05 | atmosphere | 1000 | 270 | < th | dose independent | sin | 17 | NA |
| 205 | 86.08 | atmosphere | 1000 | 10 | < th | dose independent | rect. | 10 | 18 |
| 218 | 86.16 | atmosphere | 1000 | 10 | < th | dose independent | rect. | 12 | 16 |
| 259 | 86.25 | atmosphere | 1005 | 10 | < th | dose dependent | rect. | 17 | 23 |
| 261 | 86.26 | wind | 1 | 14400 | < th | dose dependent | rect. | 9 | 2 |
| 274 | 86.29 | humidity | 80 | 720 | < th | dose dependent | rect. | 12 | 1 |
| 276 | 86.31 | atmosphere | 1005 | 10 | < th | dose dependent | no | NA | NA |
| 277 | 86.31 | atmosphere | 1005 | 10 | < th | dose dependent | rect. | 15 | 23 |
| 284 | 86.33 | atmosphere | 1005 | 10 | < th | dose dependent | rect. | 19 | 23 |
| 290 | 86.34 | atmosphere | 1005 | 10 | < th | dose dependent | rect. | 1 | 23 |
| 298 | 86.37 | atmosphere | 1005 | 10 | < th | dose dependent | rect. | 21 | 23 |
| 302 | 86.38 | atmosphere | 1005 | 10 | < th | dose dependent | rect. | 23 | 23 |
| 315 | 86.43 | temperature | 30 | 90 | < th | dose dependent | rect. | 5 | 14 |
| 326 | 86.45 | atmosphere | 1005 | 10 | < th | dose dependent | rect. | 13 | 23 |
| 333 | 86.46 | atmosphere | 1005 | 10 | < th | dose dependent | rect. | 3 | 23 |
| 335 | 86.47 | atmosphere | 1000 | 270 | > th | dose independent | sin | 16 | NA |
| 398 | 86.64 | temperature | 20 | 10 | > th | dose dependent | rect. | 1 | 15 |
| 424 | 86.72 | atmosphere | 995 | 10 | > th | dose dependent | rect. | 14 | 22 |
| 434 | 86.74 | atmosphere | 1000 | 10 | > th | dose independent | rect. | 16 | 18 |
| 448 | 86.77 | atmosphere | 1000 | 10 | < th | dose independent | sin | 16 | NA |
| 492 | 86.88 | atmosphere | 1000 | 10 | > th | dose dependent | rect. | 15 | 8 |
| 493 | 86.88 | temperature | 30 | 90 | < th | dose dependent | rect. | 5 | 16 |
| 517 | 86.96 | temperature | 10 | 270 | > th | dose dependent | rect. | 17 | 22 |
| 522 | 86.97 | temperature | 30 | 10 | < th | dose dependent | rect. | 5 | 14 |
| 565 | 87.05 | temperature | 15 | 270 | > th | dose dependent | rect. | 23 | 15 |
| 570 | 87.06 | atmosphere | 1010 | 720 | < th | dose dependent | rect. | 9 | 13 |
| 593 | 87.11 | atmosphere | 995 | 720 | > th | dose independent | rect. | 13 | 23 |
| 599 | 87.13 | temperature | 20 | 10 | > th | dose dependent | rect. | 9 | 7 |
| 609 | 87.15 | temperature | 20 | 270 | > th | dose dependent | rect. | 9 | 5 |
| 617 | 87.16 | temperature | 20 | 90 | > th | dose dependent | rect. | 9 | 7 |
| 624 | 87.17 | temperature | 30 | 10 | < th | dose dependent | rect. | 5 | 18 |
| 627 | 87.18 | atmosphere | 1010 | 720 | < th | dose dependent | sin | 20 | NA |
| 638 | 87.21 | radiation | 10 | 270 | > th | dose independent | rect. | 8 | 6 |
| 663 | 87.25 | atmosphere | 1010 | 720 | < th | dose dependent | rect. | 11 | 9 |
| 672 | 87.26 | temperature | 10 | 10 | > th | dose dependent | sin | 0 | NA |
| 690 | 87.28 | temperature | 30 | 270 | < th | dose dependent | rect. | 3 | 16 |
| 744 | 87.36 | wind | 1 | 14400 | > th | dose independent | rect. | 2 | 1 |
| 764 | 87.39 | temperature | 10 | 90 | > th | dose dependent | sin | 1 | NA |
| 813 | 87.45 | atmosphere | 1000 | 10 | > th | dose independent | sin | 16 | NA |
| 836 | 87.48 | temperature | 30 | 720 | > th | dose independent | rect. | 16 | 22 |
| 846 | 87.48 | temperature | 15 | 270 | > th | dose dependent | rect. | 19 | 19 |
| 899 | 87.55 | temperature | 25 | 270 | > th | dose dependent | rect. | 18 | 20 |
| 915 | 87.57 | temperature | 20 | 10 | > th | dose dependent | rect. | 23 | 17 |
| 971 | 87.64 | atmosphere | 1000 | 30 | > th | dose independent | sin | 14 | NA |
| 989 | 87.66 | temperature | 30 | 10 | < th | dose dependent | sin | 23 | NA |
| 994 | 87.66 | atmosphere | 1015 | 90 | < th | dose dependent | rect. | 19 | 10 |