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Os03g0719700

blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II

Description : Similar to Phytochrome A.


log2(Expression) ~ Norm(μ, σ2)

μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8

par. value (S.E.)
α : 6.81 (0.0264) R2 : 0.427
β1 : 1.29 (0.0966) R2dD : 0.231 R2D : 0.165
β2 : 0.795 (0.0689) R2dC : 0.168 R2C : 0.16
β3 : -- (--) R2dE : -- R2E : --
β4 : -- (--) R2dD*C : -- R2D*C : --
β5 : -- (--) R2dD*E : -- R2D*E : --
γ1 : 0.392 (0.0563) R2dN8 : 0.0817 R2N8 : 0.0214
σ : 0.496
deviance : 112.22
__
_____
C
peak time of C : 6.1
E
wheather : --
threshold : --
memory length : --
response mode : --
dose dependency : --
G
type of G : --
peak or start time of G : --
open length of G : --

__

Dependence on each variable

Residual plot

Process of the parameter reduction
(fixed parameters. wheather = radiation, response mode = < th, dose dependency = dose independent, type of G = no)

deviance σ α β1 β2 β3 β4 β5 γ1 peak time of C threshold memory length peak or start time of G open length of G
107.7 0.488 6.85 1.23 0.113 1.15 3.49 3.97 0.383 17.1 0.78 744 -- --
111 0.491 6.84 1.37 0.141 0.837 -0.92 -- 0.384 4.95 0.67 774 -- --
109.94 0.492 6.81 1.29 0.792 -0.0972 -- -0.547 0.394 5.55 0.3166 2661 -- --
111.72 0.496 6.81 1.29 0.804 0.116 -- -- 0.394 6.62 14.65 4535 -- --
113.52 0.496 6.79 1.18 -- 1.03 -- -0.139 0.435 -- 1.199 749 -- --
111.95 0.496 6.81 1.29 0.797 -- -0.346 -- 0.391 6 -- -- -- --
112.22 0.496 6.81 1.29 0.795 -- -- -- 0.392 6.1 -- -- -- --
112.32 0.494 6.82 1.36 -- 1.03 -- -- 0.433 -- 1.16 768 -- --
133.39 0.538 6.81 -- 0.77 0.613 -- -- 0.239 5.91 58.72 36225 -- --
145.01 0.563 6.83 1.31 -- -- -- -- 0.41 -- -- -- -- --
155.87 0.584 6.84 -- 0.814 -- -- -- 0.249 6.02 -- -- -- --
157.49 0.584 6.91 -- -- 0.91 -- -- 0.0429 -- 59.99 47520 -- --
190.25 0.644 6.86 -- -- -- -- -- 0.265 -- -- -- -- --

Results of the grid search

Summarized heatmap of deviance
 Histogram

Local optima within top1000 grid-points

rank deviance wheather threshold memory length response mode dose dependency type of G peak or start time of G open length of G
1 106.52 atmosphere 1010.0 720 < th dose independent rect. 19 11
2 106.58 wind 7.0 90 < th dose independent rect. 4 12
3 106.64 temperature 20.0 720 > th dose independent rect. 6 12
4 106.67 wind 7.0 270 < th dose independent rect. 2 12
5 106.70 humidity 90.0 720 < th dose independent rect. 16 2
7 106.80 humidity 60.0 90 > th dose independent rect. 12 19
8 106.82 wind 5.0 270 < th dose independent rect. 14 12
10 106.86 temperature 30.0 720 < th dose independent rect. 18 5
11 106.88 humidity 70.0 720 > th dose independent rect. 18 12
14 106.92 humidity 90.0 720 > th dose independent rect. 3 1
16 106.95 wind 7.0 720 < th dose independent rect. 16 2
17 106.95 humidity 70.0 720 > th dose independent rect. 18 5
21 107.05 wind 9.0 720 < th dose independent rect. 16 9
23 107.05 wind 9.0 720 < th dose dependent rect. 15 3
25 107.06 radiation 1.0 720 > th dose independent rect. 7 10
31 107.09 wind 1.0 270 > th dose dependent rect. 7 2
37 107.13 humidity 50.0 720 > th dose dependent rect. 7 2
39 107.14 humidity 70.0 720 > th dose independent rect. 19 2
41 107.14 atmosphere 995.0 90 > th dose dependent rect. 12 19
42 107.14 atmosphere 1000.0 10 > th dose dependent rect. 12 20
43 107.15 atmosphere 1010.0 90 < th dose independent rect. 4 12
44 107.16 humidity 50.0 720 > th dose independent rect. 11 19
45 107.19 wind 3.0 270 > th dose independent rect. 7 2
49 107.20 humidity 50.0 90 > th dose independent rect. 4 13
55 107.24 precipitation 0.1 720 < th dose independent rect. 16 2
56 107.24 wind 9.0 720 < th dose independent rect. 4 9
58 107.24 precipitation 0.1 720 < th dose dependent rect. 16 2
59 107.25 humidity 70.0 720 > th dose independent rect. 7 2
64 107.27 wind 9.0 270 < th dose dependent rect. 2 12
65 107.28 wind 5.0 720 < th dose independent rect. 4 2
69 107.28 temperature 30.0 720 < th dose independent rect. 18 13
73 107.29 temperature 30.0 720 < th dose independent rect. 18 3
83 107.34 atmosphere 1015.0 720 < th dose independent rect. 1 15
91 107.38 radiation 40.0 90 < th dose independent rect. 4 12
93 107.39 temperature 15.0 720 > th dose independent rect. 4 2
94 107.39 radiation 30.0 720 < th dose independent rect. 7 2
98 107.40 radiation 1.0 720 > th dose independent rect. 7 22
99 107.40 wind 9.0 720 < th dose dependent rect. 4 2
130 107.43 radiation 1.0 720 < th dose dependent rect. 18 5
131 107.43 humidity 50.0 720 > th dose dependent rect. 23 10
134 107.44 atmosphere 995.0 4320 > th dose independent rect. 24 5
137 107.44 precipitation 0.1 720 < th dose independent rect. 6 22
140 107.44 precipitation 0.1 720 < th dose dependent rect. 6 22
144 107.46 wind 9.0 720 < th dose independent rect. 13 15
145 107.46 temperature 15.0 720 > th dose independent rect. 18 22
152 107.48 humidity 80.0 720 > th dose independent rect. 6 5
153 107.48 humidity 90.0 720 < th dose dependent rect. 15 3
154 107.48 humidity 50.0 720 > th dose dependent rect. 23 12
155 107.49 radiation 1.0 90 > th dose independent rect. 7 11
174 107.52 humidity 80.0 720 > th dose independent rect. 23 12
177 107.52 radiation 40.0 720 < th dose dependent rect. 7 2
179 107.53 temperature 15.0 90 > th dose independent rect. 4 12
187 107.54 wind 9.0 270 < th dose dependent rect. 15 11
188 107.55 radiation 1.0 720 > th dose independent rect. 16 1
190 107.55 atmosphere 1005.0 720 > th dose independent rect. 19 6
196 107.56 temperature 15.0 270 > th dose independent rect. 2 13
201 107.57 radiation 1.0 720 < th dose independent rect. 18 5
207 107.59 precipitation 0.1 270 < th dose independent rect. 15 11
209 107.59 precipitation 0.1 270 < th dose dependent rect. 15 11
215 107.61 temperature 10.0 720 > th dose independent rect. 16 2
216 107.61 atmosphere 1015.0 720 < th dose independent rect. 16 2
217 107.61 radiation 40.0 720 < th dose independent rect. 16 2
222 107.62 atmosphere 1010.0 720 < th dose independent rect. 19 6
224 107.62 radiation 20.0 30 < th dose independent rect. 11 20
228 107.63 temperature 30.0 720 < th dose independent rect. 4 2
229 107.63 humidity 50.0 720 > th dose independent rect. 4 2
232 107.63 atmosphere 995.0 720 > th dose independent rect. 4 2
233 107.63 atmosphere 1015.0 720 < th dose independent rect. 4 2
234 107.63 radiation 20.0 720 < th dose independent rect. 4 2
237 107.63 atmosphere 1010.0 720 < th dose independent rect. 19 4
239 107.63 temperature 10.0 720 > th dose independent rect. 6 22
240 107.63 humidity 50.0 720 > th dose independent rect. 9 22
244 107.64 wind 9.0 720 < th dose independent rect. 18 22
248 107.65 humidity 70.0 720 > th dose independent rect. 23 10
249 107.65 radiation 30.0 720 < th dose independent rect. 23 10
254 107.66 temperature 30.0 720 < th dose independent rect. 7 2
255 107.66 humidity 50.0 720 > th dose independent rect. 11 10
259 107.67 temperature 20.0 270 > th dose independent rect. 6 3
261 107.67 humidity 50.0 720 > th dose independent rect. 9 14
266 107.68 wind 9.0 720 < th dose independent rect. 16 17
277 107.70 wind 1.0 720 > th dose independent rect. 6 5
288 107.72 precipitation 0.1 720 < th dose independent rect. 4 2
289 107.72 temperature 10.0 720 > th dose independent rect. 18 5
291 107.72 radiation 20.0 720 < th dose independent rect. 18 5
294 107.72 temperature 10.0 720 > th dose independent rect. 23 19
295 107.72 precipitation 0.1 720 < th dose dependent rect. 4 2
296 107.72 humidity 50.0 720 > th dose dependent rect. 6 5
306 107.74 precipitation 0.1 720 < th dose independent rect. 7 19
307 107.74 precipitation 0.1 720 < th dose independent rect. 23 19
308 107.74 radiation 30.0 720 < th dose dependent rect. 18 5
311 107.74 precipitation 0.1 720 < th dose dependent rect. 7 19
312 107.74 precipitation 0.1 720 < th dose dependent rect. 23 19
321 107.76 radiation 1.0 720 < th dose dependent rect. 19 23
324 107.77 atmosphere 995.0 720 > th dose independent rect. 18 5
331 107.77 radiation 40.0 720 < th dose dependent rect. 4 2
332 107.77 atmosphere 995.0 30 > th dose dependent rect. 16 13
338 107.78 temperature 10.0 720 > th dose independent rect. 6 5
339 107.78 atmosphere 995.0 720 > th dose independent rect. 6 5
340 107.78 atmosphere 1015.0 720 < th dose independent rect. 6 5
342 107.78 temperature 10.0 720 > th dose independent rect. 11 19
344 107.78 atmosphere 1015.0 720 < th dose independent rect. 18 22
348 107.78 atmosphere 1005.0 10 < th dose dependent rect. 3 21
350 107.79 temperature 10.0 720 > th dose independent rect. 16 9
351 107.79 radiation 40.0 720 < th dose independent rect. 16 9
354 107.79 temperature 10.0 720 > th dose independent rect. 1 15
356 107.79 wind 9.0 720 < th dose independent rect. 6 22
371 107.80 atmosphere 1000.0 90 > th dose dependent rect. 23 6
374 107.81 atmosphere 1015.0 720 < th dose independent rect. 2 5
379 107.81 atmosphere 1005.0 720 > th dose independent rect. 10 16
380 107.81 wind 1.0 10 > th dose independent rect. 12 19
384 107.81 radiation 1.0 720 < th dose dependent rect. 4 14
387 107.82 wind 5.0 1440 > th dose independent rect. 15 1
388 107.82 atmosphere 995.0 4320 > th dose independent rect. 6 3
395 107.82 temperature 30.0 90 < th dose dependent rect. 5 2
403 107.83 temperature 10.0 720 > th dose independent rect. 4 9
404 107.83 atmosphere 995.0 720 > th dose independent rect. 4 9
406 107.83 atmosphere 1015.0 720 < th dose independent rect. 4 9
413 107.83 temperature 10.0 720 > th dose independent rect. 13 15
414 107.83 humidity 90.0 720 < th dose dependent rect. 14 8
426 107.84 atmosphere 1000.0 10 > th dose dependent rect. 16 15
442 107.86 wind 9.0 720 < th dose independent rect. 18 5
443 107.86 radiation 20.0 14400 < th dose independent rect. 24 6
447 107.86 atmosphere 1005.0 10 < th dose dependent rect. 7 17
457 107.87 wind 9.0 270 < th dose independent rect. 9 22
464 107.87 radiation 1.0 720 < th dose dependent rect. 7 22
475 107.88 humidity 50.0 90 > th dose dependent rect. 12 19
482 107.89 precipitation 0.1 720 < th dose independent rect. 6 5
492 107.89 precipitation 0.1 720 < th dose independent rect. 5 16
495 107.89 radiation 1.0 720 < th dose independent rect. 19 22
496 107.89 precipitation 0.1 720 < th dose dependent rect. 6 5
498 107.89 precipitation 0.1 720 < th dose dependent rect. 5 16
501 107.90 wind 1.0 90 > th dose independent rect. 4 2
502 107.90 humidity 50.0 720 > th dose independent rect. 6 5
517 107.91 atmosphere 1010.0 270 < th dose independent rect. 2 12
531 107.91 radiation 40.0 90 < th dose dependent rect. 11 20
535 107.92 wind 1.0 90 > th dose independent rect. 4 12
537 107.92 atmosphere 995.0 90 > th dose independent rect. 16 12
541 107.92 atmosphere 1010.0 90 < th dose independent rect. 11 20
560 107.94 atmosphere 1005.0 720 > th dose independent sin 16 NA
562 107.94 atmosphere 1005.0 30 > th dose independent rect. 23 6
564 107.94 temperature 30.0 720 < th dose independent rect. 23 10
566 107.94 wind 1.0 270 > th dose independent rect. 6 12
567 107.94 humidity 50.0 720 > th dose independent rect. 11 12
573 107.95 temperature 15.0 720 > th dose independent rect. 18 12
592 107.96 precipitation 0.1 720 < th dose independent rect. 4 9
594 107.96 temperature 10.0 90 > th dose independent rect. 16 12
597 107.96 radiation 40.0 90 < th dose independent rect. 16 12
601 107.96 precipitation 0.1 720 < th dose dependent rect. 4 9
607 107.97 temperature 15.0 720 > th dose independent rect. 19 2
609 107.97 wind 9.0 720 < th dose independent rect. 6 5
613 107.97 precipitation 0.1 90 < th dose independent rect. 4 12
620 107.97 radiation 1.0 720 < th dose dependent rect. 18 3
623 107.97 precipitation 0.1 90 < th dose dependent rect. 4 12
652 107.99 precipitation 0.1 720 < th dose independent rect. 14 14
655 107.99 wind 9.0 720 < th dose independent rect. 23 19
661 107.99 precipitation 0.1 720 < th dose dependent rect. 14 14
665 108.00 humidity 80.0 90 > th dose independent rect. 5 1
667 108.00 temperature 20.0 270 < th dose independent rect. 3 5
669 108.00 precipitation 0.1 720 < th dose independent rect. 6 12
674 108.00 humidity 70.0 720 < th dose independent rect. 14 18
679 108.00 precipitation 0.1 720 < th dose dependent rect. 6 12
688 108.01 wind 5.0 90 < th dose independent rect. 5 1
690 108.01 wind 1.0 720 > th dose independent rect. 16 2
701 108.01 humidity 50.0 10 > th dose dependent rect. 13 18
722 108.02 radiation 40.0 10 < th dose dependent rect. 11 20
723 108.03 atmosphere 1005.0 720 > th dose independent rect. 20 1
727 108.03 humidity 70.0 720 < th dose independent rect. 15 4
733 108.03 precipitation 0.1 270 < th dose independent rect. 2 13
745 108.03 precipitation 0.1 270 < th dose dependent rect. 2 13
748 108.03 atmosphere 1005.0 10 < th dose dependent rect. 14 23
749 108.04 radiation 1.0 720 > th dose independent sin 0 NA
758 108.04 radiation 20.0 30 < th dose independent rect. 8 21
768 108.04 atmosphere 1005.0 10 < th dose dependent rect. 7 22
771 108.05 precipitation 0.1 90 < th dose independent rect. 5 1
790 108.05 precipitation 0.1 720 < th dose independent rect. 18 13
794 108.05 atmosphere 1015.0 90 < th dose independent rect. 6 23
797 108.05 precipitation 0.1 90 < th dose dependent rect. 5 1
802 108.05 precipitation 0.1 720 < th dose dependent rect. 18 13
811 108.06 temperature 10.0 90 > th dose independent rect. 5 1
813 108.06 temperature 15.0 4320 > th dose independent rect. 9 1
814 108.06 temperature 30.0 90 < th dose independent rect. 5 1
815 108.06 humidity 50.0 90 > th dose independent rect. 5 1
818 108.06 atmosphere 995.0 90 > th dose independent rect. 5 1
819 108.06 atmosphere 1010.0 90 < th dose independent rect. 5 1
821 108.06 radiation 20.0 90 < th dose independent rect. 5 1
834 108.06 radiation 1.0 720 < th dose independent rect. 4 13
840 108.06 temperature 10.0 90 > th dose independent rect. 6 23
854 108.07 atmosphere 995.0 14400 > th dose independent rect. 8 5
855 108.07 humidity 70.0 720 < th dose independent rect. 14 6
880 108.07 radiation 40.0 90 < th dose dependent rect. 5 1
900 108.08 temperature 15.0 90 > th dose independent rect. 19 12
925 108.08 atmosphere 1005.0 10 < th dose dependent rect. 11 22
932 108.09 precipitation 0.1 720 < th dose independent rect. 19 11
945 108.09 precipitation 0.1 720 < th dose dependent rect. 19 11
954 108.10 atmosphere 995.0 270 > th dose independent rect. 18 12
962 108.10 radiation 40.0 30 < th dose dependent rect. 16 13
968 108.11 humidity 50.0 720 > th dose independent rect. 19 2
969 108.11 atmosphere 995.0 720 > th dose independent rect. 19 2
970 108.11 radiation 1.0 720 < th dose independent rect. 19 2
985 108.11 temperature 10.0 720 > th dose independent rect. 21 22
986 108.11 precipitation 0.1 270 < th dose independent rect. 9 22
987 108.11 temperature 10.0 720 > th dose dependent rect. 16 2
997 108.11 wind 9.0 30 < th dose dependent rect. 5 11
1000 108.11 precipitation 0.1 270 < th dose dependent rect. 9 22