Os03g0719500
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Similar to Ser-Thr protein kinase-like protein.
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Os03g0719500 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Similar to Ser-Thr protein kinase-like protein.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = temperature,
response mode = > th, dose dependency = dose dependent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 37.47 | 0.288 | 12.1 | 0.895 | 0.354 | -0.387 | -0.385 | 3.7 | -0.219 | 6.97 | 25.51 | 4431 | -- | -- |
| 40.15 | 0.297 | 12.2 | 0.0888 | 0.336 | -0.349 | -0.457 | -- | -0.352 | 7.93 | 14.3 | 40505 | -- | -- |
| 37.83 | 0.286 | 12.1 | 0.887 | 0.355 | -0.393 | -- | 3.72 | -0.221 | 6.77 | 25.59 | 4430 | -- | -- |
| 40.74 | 0.299 | 12.2 | 0.0696 | 0.338 | -0.316 | -- | -- | -0.357 | 7.7 | 11.4 | 40367 | -- | -- |
| 43.63 | 0.308 | 12.1 | 1.03 | -- | -0.45 | -- | 4.24 | -0.17 | -- | 25.49 | 3263 | -- | -- |
| 41.37 | 0.302 | 12.2 | 0.0158 | 0.363 | -- | -0.363 | -- | -0.402 | 6.95 | -- | -- | -- | -- |
| 41.7 | 0.302 | 12.2 | 0.00837 | 0.364 | -- | -- | -- | -0.401 | 6.76 | -- | -- | -- | -- |
| 46.9 | 0.32 | 12.2 | 0.0792 | -- | -0.344 | -- | -- | -0.348 | -- | 11.4 | 40367 | -- | -- |
| 40.86 | 0.299 | 12.2 | -- | 0.341 | -0.282 | -- | -- | -0.369 | 7.58 | 7.348 | 6633 | -- | -- |
| 48.61 | 0.326 | 12.2 | 0.0166 | -- | -- | -- | -- | -0.394 | -- | -- | -- | -- | -- |
| 41.7 | 0.302 | 12.2 | -- | 0.364 | -- | -- | -- | -0.402 | 6.76 | -- | -- | -- | -- |
| 44.86 | 0.312 | 12.2 | -- | -- | -0.482 | -- | -- | -0.34 | -- | -38.89 | 375 | -- | -- |
| 48.61 | 0.325 | 12.2 | -- | -- | -- | -- | -- | -0.396 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 36.42 | temperature | 25 | 14400 | < th | dose independent | rect. | 10 | 1 |
| 2 | 36.42 | temperature | 25 | 14400 | > th | dose independent | rect. | 10 | 2 |
| 11 | 36.54 | radiation | 30 | 14400 | > th | dose dependent | rect. | 7 | 1 |
| 28 | 36.55 | humidity | 80 | 43200 | > th | dose dependent | rect. | 10 | 1 |
| 29 | 36.55 | humidity | 80 | 43200 | > th | dose dependent | rect. | 10 | 3 |
| 38 | 36.64 | humidity | 90 | 43200 | > th | dose independent | rect. | 9 | 2 |
| 43 | 36.65 | humidity | 80 | 43200 | > th | dose independent | rect. | 12 | 1 |
| 45 | 36.66 | humidity | 90 | 43200 | < th | dose independent | rect. | 10 | 1 |
| 52 | 36.67 | temperature | 20 | 14400 | > th | dose dependent | rect. | 13 | 1 |
| 57 | 36.69 | temperature | 20 | 14400 | > th | dose independent | rect. | 24 | 1 |
| 73 | 36.75 | temperature | 20 | 14400 | < th | dose independent | rect. | 24 | 1 |
| 80 | 36.76 | radiation | 30 | 14400 | > th | dose independent | rect. | 7 | 1 |
| 84 | 36.76 | temperature | 20 | 14400 | > th | dose independent | rect. | 21 | 4 |
| 147 | 36.81 | temperature | 20 | 14400 | < th | dose independent | rect. | 21 | 4 |
| 226 | 36.88 | temperature | 25 | 14400 | > th | dose independent | sin | 2 | NA |
| 227 | 36.88 | temperature | 25 | 14400 | < th | dose independent | sin | 1 | NA |
| 250 | 36.89 | temperature | 20 | 14400 | > th | dose dependent | sin | 0 | NA |
| 361 | 36.95 | radiation | 10 | 270 | < th | dose independent | rect. | 5 | 22 |
| 373 | 36.96 | wind | 7 | 43200 | > th | dose independent | rect. | 10 | 3 |
| 395 | 36.97 | wind | 7 | 43200 | < th | dose independent | rect. | 10 | 3 |
| 494 | 37.02 | wind | 7 | 43200 | < th | dose independent | rect. | 11 | 1 |
| 524 | 37.03 | radiation | 1 | 4320 | < th | dose dependent | rect. | 6 | 2 |
| 589 | 37.06 | wind | 7 | 43200 | > th | dose independent | rect. | 11 | 1 |
| 685 | 37.09 | temperature | 20 | 14400 | > th | dose dependent | no | NA | NA |
| 693 | 37.09 | temperature | 20 | 14400 | > th | dose dependent | rect. | 17 | 23 |
| 773 | 37.13 | temperature | 30 | 14400 | < th | dose dependent | rect. | 12 | 1 |
| 792 | 37.14 | wind | 5 | 43200 | > th | dose dependent | rect. | 11 | 1 |
| 849 | 37.17 | humidity | 80 | 43200 | < th | dose independent | rect. | 12 | 1 |
| 885 | 37.18 | temperature | 20 | 14400 | > th | dose dependent | rect. | 17 | 1 |
| 920 | 37.19 | radiation | 20 | 90 | < th | dose dependent | rect. | 7 | 21 |
| 1000 | 37.22 | wind | 7 | 43200 | > th | dose dependent | rect. | 10 | 3 |