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Notice!
This gene did NOT pass the analysis criteria (log2(expression) > 5 in more than 80% of samples & normality of residuals was not rejected).
The modeling results may be unreliable.

Os03g0718400

blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II

Description : Hypothetical protein.


log2(Expression) ~ Norm(μ, σ2)

μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8

par. value (S.E.)
α : 3.5 (0.0238) R2 : 0.253
β1 : -- (--) R2dD : -- R2D : --
β2 : -- (--) R2dC : -- R2C : --
β3 : 1.84 (0.156) R2dE : 0.239 R2E : 0.25
β4 : -- (--) R2dD*C : -- R2D*C : --
β5 : -- (--) R2dD*E : -- R2D*E : --
γ1 : 0.0634 (0.0512) R2dN8 : 0.00342 R2N8 : 0.0138
σ : 0.445
deviance : 91.4
__
_____
C
peak time of C : --
E
wheather : wind
threshold : 0.8903
memory length : 59
response mode : < th
dose dependency : dose dependent
G
type of G : rect.
peak or start time of G : 2
open length of G : 1.02

__

Dependence on each variable

Residual plot

Process of the parameter reduction
(fixed parameters. wheather = wind, response mode = < th, dose dependency = dose dependent, type of G = rect.)

deviance σ α β1 β2 β3 β4 β5 γ1 peak time of C threshold memory length peak or start time of G open length of G
87.8 0.44 3.49 -0.23 0.189 1.7 -0.00259 -1.73 0.0437 10.4 0.9437 11 2 1.08
88.19 0.437 3.5 -0.212 0.188 1.87 0.0207 -- 0.0368 10.3 1.035 13 1.98 1.24
87.79 0.436 3.5 -0.23 0.188 1.7 -- -1.72 0.0434 10.4 0.9233 12 2 1.09
88.19 0.437 3.5 -0.206 0.188 1.88 -- -- 0.0375 10.4 1.034 13 1.98 1.3
89.94 0.442 3.5 -0.233 -- 1.66 -- -1.72 0.0434 -- 0.9246 12 2 1.13
116.08 0.505 3.47 -0.198 0.194 -- -0.217 -- 0.171 6.97 -- -- -- --
116.18 0.505 3.47 -0.201 0.194 -- -- -- 0.172 7.29 -- -- -- --
90.25 0.442 3.5 -0.205 -- 1.83 -- -- 0.0381 -- 0.8873 16 2 1.31
89.28 0.44 3.49 -- 0.194 1.9 -- -- 0.0437 10.4 0.8875 59 2 1.02
118.18 0.508 3.47 -0.198 -- -- -- -- 0.175 -- -- -- -- --
117.25 0.507 3.46 -- 0.192 -- -- -- 0.195 7.36 -- -- -- --
91.4 0.445 3.5 -- -- 1.84 -- -- 0.0634 -- 0.8903 59 2 1.02
119.21 0.51 3.47 -- -- -- -- -- 0.197 -- -- -- -- --

Results of the grid search

Summarized heatmap of deviance
 Histogram

Local optima within top1000 grid-points

rank deviance wheather threshold memory length response mode dose dependency type of G peak or start time of G open length of G
1 87.85 wind 1.0 10 < th dose dependent rect. 2 1
5 89.33 wind 1.0 10 < th dose independent rect. 2 1
7 89.40 atmosphere 1015.0 30 < th dose dependent rect. 2 1
12 89.50 temperature 15.0 10 > th dose dependent rect. 2 1
22 89.58 humidity 90.0 30 > th dose independent rect. 2 1
24 89.61 temperature 10.0 30 > th dose independent rect. 2 1
26 89.61 temperature 30.0 30 < th dose independent rect. 2 1
27 89.61 humidity 50.0 30 > th dose independent rect. 2 1
30 89.61 atmosphere 995.0 30 > th dose independent rect. 2 1
31 89.61 atmosphere 1010.0 30 < th dose independent rect. 2 1
33 89.61 radiation 1.0 30 < th dose independent rect. 2 1
38 89.61 precipitation 0.1 30 < th dose independent rect. 2 1
39 89.61 temperature 10.0 30 > th dose independent rect. 3 23
43 89.61 radiation 1.0 30 < th dose dependent rect. 2 1
48 89.61 precipitation 0.1 30 < th dose dependent rect. 2 1
49 89.62 humidity 50.0 30 > th dose dependent rect. 2 1
85 89.69 temperature 30.0 30 < th dose dependent rect. 2 1
90 89.78 atmosphere 995.0 30 > th dose dependent rect. 2 1
91 89.80 atmosphere 1005.0 30 > th dose dependent rect. 2 1
94 89.82 atmosphere 1005.0 30 > th dose independent rect. 2 1
102 90.16 wind 1.0 30 > th dose independent rect. 2 1
105 90.58 wind 9.0 30 < th dose independent rect. 3 23
107 91.08 wind 1.0 30 < th dose independent rect. 24 3
113 92.43 atmosphere 995.0 10 > th dose independent rect. 3 23
117 92.91 wind 1.0 30 < th dose dependent rect. 24 3
119 93.02 wind 1.0 10 < th dose independent rect. 14 13
121 93.10 wind 1.0 10 < th dose independent rect. 17 10
123 93.16 wind 1.0 10 < th dose independent rect. 21 6
128 93.25 precipitation 0.1 10 < th dose independent rect. 3 23
129 93.25 precipitation 0.1 10 < th dose dependent rect. 3 23
141 94.40 wind 1.0 30 < th dose dependent rect. 21 6
159 95.15 radiation 1.0 43200 < th dose dependent rect. 3 1
161 95.38 wind 1.0 30 < th dose dependent rect. 14 13
169 96.34 wind 1.0 30 < th dose dependent rect. 10 17
183 96.98 wind 1.0 10 < th dose independent rect. 8 19
194 97.20 wind 9.0 1440 < th dose independent rect. 3 1
195 97.20 temperature 10.0 1440 > th dose independent rect. 3 1
198 97.20 temperature 30.0 1440 < th dose independent rect. 3 1
202 97.20 humidity 50.0 1440 > th dose independent rect. 3 1
211 97.20 atmosphere 995.0 1440 > th dose independent rect. 3 1
212 97.20 radiation 1.0 1440 < th dose independent rect. 3 1
232 97.20 temperature 10.0 1440 > th dose independent rect. 4 23
251 97.44 humidity 50.0 30 > th dose independent rect. 3 23
266 98.36 atmosphere 1015.0 30 < th dose independent rect. 3 23
289 99.80 temperature 10.0 30 > th dose dependent rect. 3 23
372 101.56 humidity 90.0 10 > th dose independent rect. 24 3
386 102.00 humidity 90.0 90 < th dose independent rect. 1 2
389 102.04 wind 1.0 10 > th dose independent sin 16 NA
459 103.56 atmosphere 1015.0 1440 < th dose independent rect. 3 1
486 103.91 wind 1.0 10 < th dose independent sin 17 NA
519 104.21 temperature 10.0 720 > th dose dependent rect. 3 1
604 104.91 wind 1.0 30 > th dose dependent rect. 2 1
617 105.06 wind 9.0 90 < th dose dependent rect. 15 12
633 105.17 temperature 10.0 90 > th dose dependent rect. 3 16
723 105.31 temperature 15.0 90 > th dose dependent rect. 3 6
787 105.88 wind 1.0 30 > th dose independent rect. 3 23
790 105.91 radiation 40.0 30 < th dose dependent rect. 3 23
839 106.24 temperature 20.0 90 > th dose independent rect. 3 6
856 106.32 temperature 15.0 90 > th dose independent rect. 3 12
890 106.58 temperature 15.0 90 > th dose independent rect. 3 16
899 106.67 radiation 40.0 90 < th dose dependent rect. 15 12
918 106.80 wind 9.0 90 < th dose dependent rect. 3 22
924 106.84 radiation 40.0 90 < th dose dependent rect. 13 14
930 106.88 humidity 50.0 90 > th dose dependent rect. 3 6
943 106.94 wind 7.0 90 < th dose independent rect. 3 12
951 107.00 humidity 70.0 90 > th dose independent rect. 3 6
968 107.14 wind 9.0 90 < th dose dependent rect. 3 12
971 107.16 wind 1.0 10 > th dose independent rect. 16 15
977 107.19 atmosphere 1000.0 90 > th dose independent rect. 3 6
983 107.22 wind 7.0 90 < th dose independent rect. 3 16
994 107.27 temperature 20.0 90 > th dose independent rect. 3 4
995 107.27 wind 9.0 90 < th dose dependent rect. 3 10
998 107.29 temperature 25.0 270 > th dose independent rect. 23 4