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Os03g0718200

blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II

Description : Zinc finger, SWIM-type domain containing protein.


log2(Expression) ~ Norm(μ, σ2)

μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8

par. value (S.E.)
α : 9.08 (0.0186) R2 : 0.143
β1 : -- (--) R2dD : -- R2D : --
β2 : -- (--) R2dC : -- R2C : --
β3 : -- (--) R2dE : -- R2E : --
β4 : -- (--) R2dD*C : -- R2D*C : --
β5 : -- (--) R2dD*E : -- R2D*E : --
γ1 : -0.342 (0.0392) R2dN8 : 0.184 R2N8 : 0.143
σ : 0.351
deviance : 56.54
__
_____
C
peak time of C : --
E
wheather : --
threshold : --
memory length : --
response mode : --
dose dependency : --
G
type of G : --
peak or start time of G : --
open length of G : --

__

Dependence on each variable

Residual plot

Process of the parameter reduction
(fixed parameters. wheather = atmosphere, response mode = < th, dose dependency = dose independent, type of G = no)

deviance σ α β1 β2 β3 β4 β5 γ1 peak time of C threshold memory length peak or start time of G open length of G
30.6 0.26 9.05 0.757 0.388 -0.627 0.139 0.902 -0.205 19.8 1008 9547 -- --
32.35 0.265 9.06 0.593 0.438 -0.669 0.143 -- -0.213 19.9 1008 9040 -- --
30.65 0.258 9.05 0.755 0.389 -0.626 -- 0.901 -0.203 19.8 1008 9570 -- --
31.67 0.262 9.08 0.512 0.427 -0.64 -- -- -0.313 19.8 1008 6773 -- --
38.8 0.29 9.04 0.752 -- -0.64 -- 0.894 -0.208 -- 1008 9599 -- --
45.05 0.315 9.09 0.327 0.404 -- 0.101 -- -0.3 19.6 -- -- -- --
45.08 0.314 9.09 0.324 0.404 -- -- -- -0.3 19.6 -- -- -- --
39.65 0.293 9.08 0.518 -- -0.658 -- -- -0.342 -- 1008 6813 -- --
37.1 0.284 9.11 -- 0.389 -0.529 -- -- -0.416 19.9 1008 7070 -- --
53.87 0.343 9.08 0.319 -- -- -- -- -0.306 -- -- -- -- --
47.85 0.324 9.09 -- 0.402 -- -- -- -0.336 19.7 -- -- -- --
45.25 0.313 9.1 -- -- -0.546 -- -- -0.425 -- 1008 7015 -- --
56.54 0.351 9.08 -- -- -- -- -- -0.342 -- -- -- -- --

Results of the grid search

Summarized heatmap of deviance
 Histogram

Local optima within top1000 grid-points

rank deviance wheather threshold memory length response mode dose dependency type of G peak or start time of G open length of G
1 30.54 wind 3 14400 > th dose dependent rect. 11 1
4 30.99 radiation 30 14400 < th dose independent rect. 16 15
5 31.01 wind 7 14400 < th dose independent rect. 11 1
9 31.12 wind 7 14400 > th dose dependent rect. 5 9
10 31.13 wind 7 14400 > th dose dependent rect. 23 16
11 31.14 wind 5 14400 > th dose independent rect. 11 1
14 31.15 humidity 80 43200 > th dose independent rect. 20 3
16 31.17 humidity 60 43200 > th dose independent rect. 22 14
17 31.17 humidity 60 43200 > th dose independent rect. 19 17
20 31.19 atmosphere 1005 43200 < th dose independent rect. 11 1
24 31.20 humidity 80 43200 < th dose independent rect. 21 1
25 31.20 wind 7 14400 > th dose independent rect. 10 3
29 31.22 wind 9 14400 < th dose dependent rect. 11 1
33 31.23 humidity 60 43200 < th dose independent rect. 22 14
35 31.24 humidity 60 43200 < th dose independent rect. 18 18
36 31.24 wind 7 14400 > th dose dependent rect. 2 13
42 31.27 wind 5 43200 > th dose dependent rect. 15 1
43 31.28 humidity 60 43200 > th dose independent rect. 3 9
47 31.29 humidity 80 43200 > th dose independent rect. 21 1
51 31.31 humidity 80 43200 < th dose independent rect. 20 3
52 31.31 humidity 60 43200 < th dose independent rect. 3 9
71 31.36 radiation 1 14400 < th dose dependent rect. 23 6
73 31.36 radiation 20 14400 > th dose dependent rect. 17 14
74 31.37 radiation 30 14400 < th dose independent rect. 16 1
79 31.39 radiation 30 14400 < th dose independent rect. 16 12
83 31.40 wind 7 14400 < th dose independent rect. 5 9
91 31.43 atmosphere 1005 43200 > th dose independent rect. 11 1
97 31.44 wind 7 14400 > th dose independent rect. 5 9
100 31.44 wind 9 43200 < th dose dependent rect. 11 3
105 31.46 radiation 30 14400 < th dose independent rect. 16 5
115 31.48 radiation 1 14400 < th dose dependent rect. 20 9
124 31.50 humidity 60 43200 > th dose independent rect. 18 2
145 31.55 humidity 60 43200 < th dose independent sin 8 NA
151 31.56 humidity 60 43200 > th dose independent rect. 17 4
154 31.56 wind 9 14400 > th dose dependent rect. 18 21
155 31.57 humidity 60 43200 < th dose independent rect. 18 2
163 31.58 humidity 70 43200 < th dose dependent rect. 10 1
164 31.58 humidity 60 43200 < th dose dependent rect. 17 1
165 31.58 wind 3 43200 < th dose dependent rect. 20 2
178 31.60 wind 7 14400 < th dose independent rect. 7 7
184 31.61 wind 7 14400 > th dose dependent sin 4 NA
190 31.62 humidity 80 43200 > th dose independent rect. 19 5
193 31.62 wind 3 43200 > th dose dependent rect. 10 7
196 31.63 temperature 20 1440 > th dose dependent rect. 16 1
197 31.63 radiation 20 14400 > th dose dependent rect. 6 1
211 31.64 wind 7 14400 > th dose independent rect. 7 7
232 31.66 humidity 70 43200 < th dose dependent rect. 8 3
251 31.69 humidity 70 43200 < th dose dependent rect. 5 6
273 31.73 humidity 60 43200 > th dose independent sin 9 NA
289 31.74 wind 9 14400 > th dose independent rect. 19 20
305 31.75 humidity 70 43200 < th dose dependent rect. 19 16
318 31.77 humidity 60 43200 < th dose independent rect. 17 7
335 31.79 wind 3 43200 > th dose dependent rect. 11 11
336 31.79 humidity 70 43200 < th dose dependent rect. 22 13
338 31.79 humidity 60 43200 < th dose dependent rect. 17 18
339 31.79 humidity 60 43200 < th dose dependent rect. 16 21
345 31.80 humidity 60 43200 < th dose dependent rect. 10 9
374 31.83 humidity 50 43200 > th dose independent rect. 14 5
400 31.84 humidity 60 43200 < th dose dependent rect. 10 6
404 31.84 humidity 60 43200 < th dose dependent rect. 10 20
443 31.86 humidity 60 43200 < th dose dependent rect. 5 14
454 31.86 humidity 60 43200 < th dose dependent rect. 17 23
461 31.87 humidity 50 43200 > th dose independent rect. 14 16
484 31.88 wind 1 43200 < th dose independent rect. 23 3
493 31.88 humidity 60 43200 < th dose dependent sin 23 NA
541 31.90 wind 5 43200 > th dose independent rect. 11 11
583 31.91 humidity 50 43200 > th dose independent rect. 14 2
592 31.91 humidity 60 43200 < th dose dependent no NA NA
655 31.93 atmosphere 1005 43200 < th dose independent rect. 10 4
661 31.93 wind 5 43200 < th dose independent rect. 11 11
680 31.94 atmosphere 1005 43200 < th dose independent rect. 8 7
730 31.96 wind 5 43200 > th dose independent rect. 14 8
733 31.96 humidity 50 43200 > th dose independent rect. 14 10
770 31.97 wind 9 14400 < th dose independent rect. 22 17
788 31.98 humidity 50 43200 < th dose independent rect. 14 5
815 31.98 wind 5 43200 > th dose dependent rect. 11 17
816 31.98 wind 5 43200 > th dose dependent rect. 11 19
826 31.99 atmosphere 1005 43200 < th dose independent rect. 8 9
850 32.00 humidity 60 43200 < th dose independent rect. 3 23
851 32.00 wind 5 43200 > th dose dependent sin 19 NA
869 32.01 humidity 60 43200 < th dose independent no NA NA
883 32.01 wind 9 14400 < th dose independent rect. 19 20
885 32.01 humidity 60 43200 < th dose independent rect. 10 23
886 32.01 humidity 60 43200 < th dose independent rect. 21 23
888 32.01 humidity 60 43200 < th dose independent rect. 24 23
917 32.02 humidity 60 43200 < th dose independent rect. 7 23
927 32.02 humidity 50 43200 < th dose dependent rect. 15 16
940 32.03 atmosphere 1005 43200 > th dose independent rect. 8 9
966 32.04 humidity 60 43200 < th dose independent sin 15 NA
978 32.04 wind 7 43200 < th dose independent rect. 24 17
995 32.04 wind 5 43200 > th dose dependent rect. 14 6